CF832748

Overview
NameCF832748
Unique NameCF832748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1113 contig Csv1_Contig1113:320..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B2D_HUMAN (Putative histone H2B type 2-D OS=Homo sapiens GN=HIST2H2BD PE=5 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = -3 
Query:  337 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 471
            VHPD GI  KAMGIMNSF+NDIFE++A EASRLA YNK+ TITSR
Sbjct:   49 VHPDTGIWCKAMGIMNSFLNDIFERIAGEASRLAHYNKRSTITSR 93
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B2C_HUMAN (Putative histone H2B type 2-C OS=Homo sapiens GN=HIST2H2BC PE=5 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = -3 
Query:  337 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 471
            VHPD GI  KAMGIMNSF+NDIFE++A EASRLA YNK+ TITSR
Sbjct:   49 VHPDTGIWCKAMGIMNSFLNDIFERIAGEASRLAHYNKRSTITSR 93
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2BV_BOVIN (Histone H2B subacrosomal variant OS=Bos taurus GN=SUBH2BV PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 5.566e-12
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            V P  GISS+ + I+N+ IND+FE+++ EA  L  Y K+ T+T  +I+ AV L+LP +LAK+AV+ G +AV ++  S
Sbjct:   46 VVPQKGISSRTIDIINTMINDMFERISTEACNLMYYRKRCTLTPEDIEKAVYLLLPEKLAKYAVAFGKEAVQRYVRS 122
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2BV_MOUSE (Histone H2B subacrosomal variant OS=Mus musculus GN=Subh2bv PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            V P+ GISS ++ IMN  INDIFE++A EA +     K+ T+T  +IQ AV L+LP +LA  AV+ G+KAV +F  S
Sbjct:   47 VVPNRGISSYSVDIMNILINDIFERIATEACQQMFLRKRCTLTPGDIQQAVHLLLPKKLATLAVTFGSKAVHRFIHS 123
The following BLAST results are available for this feature:
BLAST of CF832748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B2D_HUMAN6.575e-1377.78Putative histone H2B type 2-D OS=Homo sapiens GN=H... [more]
H2B2C_HUMAN6.575e-1377.78Putative histone H2B type 2-C OS=Homo sapiens GN=H... [more]
H2BV_BOVIN5.566e-1245.45Histone H2B subacrosomal variant OS=Bos taurus GN=... [more]
H2BV_MOUSE8.037e-1149.35Histone H2B subacrosomal variant OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832748 ID=CF832748; Name=CF832748; organism=Citrus sinensis; type=EST; length=473bp
TTTTTTTTTTTTTTTTTCGAAATCATATTTCATTTTCATATTCTACCATA
ATGAACATGCACATCACCTGGATCAGGTCCAAATTTCTAGTACATCCAAA
CAAACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGA
CTTCATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACAT
AACACCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTA
AACTTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTC
ACCAGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCG
TCGGCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTC
TCGAAAATATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGA
GATTCCGATATCGGGATGTACCT
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