CF832748

Overview
NameCF832748
Unique NameCF832748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1113 contig Csv1_Contig1113:320..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B4_VOLCA (Histone H2B.4 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.274e-32
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   79 VHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 155
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B3_VOLCA (Histone H2B.3 OS=Volvox carteri PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.274e-32
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   81 VHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSA 157
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B4_CHLRE (Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.664e-32
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = -3 
Query:  244 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 471
            VHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   77 VHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B3_CHLRE (Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.664e-32
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = -3 
Query:  244 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 471
            VHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   77 VHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B2_CHLRE (Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.664e-32
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = -3 
Query:  244 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 471
            VHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   80 VHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 155
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1_CHLRE (Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.664e-32
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = -3 
Query:  244 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 471
            VHPD GISSKAM IMNSFINDIFEK+A EAS+L+RYNKKPT+TSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   77 VHPDTGISSKAMSIMNSFINDIFEKVATEASKLSRYNKKPTVTSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 152
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B4_WHEAT (Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 3.708e-32
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPDIGISSKAM I NSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   59 VHPDIGISSKAMSITNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 135
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1P_MOUSE (Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.079e-31
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1L_HUMAN (Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.079e-31
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1F_MOUSE (Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h2bf PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.079e-31
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CF832748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B4_VOLCA1.274e-3289.61Histone H2B.4 OS=Volvox carteri PE=3 SV=3[more]
H2B3_VOLCA1.274e-3289.61Histone H2B.3 OS=Volvox carteri PE=3 SV=3[more]
H2B4_CHLRE1.664e-3290.79Histone H2B.4 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B3_CHLRE1.664e-3290.79Histone H2B.3 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B2_CHLRE1.664e-3290.79Histone H2B.2 OS=Chlamydomonas reinhardtii PE=1 SV... [more]
H2B1_CHLRE1.664e-3290.79Histone H2B.1 OS=Chlamydomonas reinhardtii GN=H2B ... [more]
H2B4_WHEAT3.708e-3289.61Histone H2B.4 OS=Triticum aestivum GN=TH153 PE=1 S... [more]
H2B1P_MOUSE1.079e-3187.01Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp ... [more]
H2B1L_HUMAN1.079e-3187.01Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL ... [more]
H2B1F_MOUSE1.079e-3187.01Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832748 ID=CF832748; Name=CF832748; organism=Citrus sinensis; type=EST; length=473bp
TTTTTTTTTTTTTTTTTCGAAATCATATTTCATTTTCATATTCTACCATA
ATGAACATGCACATCACCTGGATCAGGTCCAAATTTCTAGTACATCCAAA
CAAACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGA
CTTCATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACAT
AACACCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTA
AACTTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTC
ACCAGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCG
TCGGCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTC
TCGAAAATATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGA
GATTCCGATATCGGGATGTACCT
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