CF832748

Overview
NameCF832748
Unique NameCF832748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1113 contig Csv1_Contig1113:320..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1B_MOUSE (Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.079e-31
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B_PEA (Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.409e-31
Identity = 69/76 (90.79%), Postives = 71/76 (93.42%), Query Frame = -3 
Query:  244 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 471
            VHPDIGISSKAMGIMNSFINDIFEKLA EASRLARYNKK TIT REIQTAVRL+LPGE+AKH VSE TKAVTKFTS
Sbjct:   43 VHPDIGISSKAMGIMNSFINDIFEKLASEASRLARYNKKSTITPREIQTAVRLLLPGEVAKHKVSEATKAVTKFTS 118
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B3B_MOUSE (Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 1.409e-31
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B3B_HUMAN (Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 1.409e-31
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B3A_MOUSE (Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 1.409e-31
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B8_CHICK (Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B5_CHICK (Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B3_DANRE (Histone H2B 3 OS=Danio rerio GN=hist2h2l PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B2F_HUMAN (Histone H2B type 2-F OS=Homo sapiens GN=HIST2H2BF PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B2E_PONAB (Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.840e-31
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CF832748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B1B_MOUSE1.079e-3187.01Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb ... [more]
H2B_PEA1.409e-3190.79Histone H2B (Fragments) OS=Pisum sativum GN=HIS2B ... [more]
H2B3B_MOUSE1.409e-3185.71Histone H2B type 3-B OS=Mus musculus GN=Hist3h2bb ... [more]
H2B3B_HUMAN1.409e-3185.71Histone H2B type 3-B OS=Homo sapiens GN=HIST3H2BB ... [more]
H2B3A_MOUSE1.409e-3185.71Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba ... [more]
H2B8_CHICK1.840e-3187.01Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV... [more]
H2B5_CHICK1.840e-3187.01Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2[more]
H2B3_DANRE1.840e-3187.01Histone H2B 3 OS=Danio rerio GN=hist2h2l PE=2 SV=3[more]
H2B2F_HUMAN1.840e-3187.01Histone H2B type 2-F OS=Homo sapiens GN=HIST2H2BF ... [more]
H2B2E_PONAB1.840e-3187.01Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832748 ID=CF832748; Name=CF832748; organism=Citrus sinensis; type=EST; length=473bp
TTTTTTTTTTTTTTTTTCGAAATCATATTTCATTTTCATATTCTACCATA
ATGAACATGCACATCACCTGGATCAGGTCCAAATTTCTAGTACATCCAAA
CAAACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGA
CTTCATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACAT
AACACCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTA
AACTTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTC
ACCAGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCG
TCGGCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTC
TCGAAAATATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGA
GATTCCGATATCGGGATGTACCT
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