CF832748

Overview
NameCF832748
Unique NameCF832748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1113 contig Csv1_Contig1113:320..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1K_BOVIN (Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 4.099e-31
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1J_HUMAN (Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 4.099e-31
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B12_XENLA (Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 4.099e-31
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B3_TIGCA (Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 5.354e-31
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   46 VHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B2E_MOUSE (Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 5.354e-31
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQT+VRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIANEASRLAHYNKRSTITSREIQTSVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1_TIGCA (Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 5.354e-31
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   46 VHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 5.354e-31
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = -3 
Query:  244 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 471
            VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS
Sbjct:   49 VHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B_PLADU (Histone H2B OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 6.992e-31
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   46 VHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 6.992e-31
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   39 VHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 115
[Close]
BLAST of CF832748 vs. ExPASy Swiss-Prot
Match: H2B_DROYA (Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 6.992e-31
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = -3 
Query:  241 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 471
            VHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   46 VHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
The following BLAST results are available for this feature:
BLAST of CF832748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B1K_BOVIN4.099e-3185.71Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE... [more]
H2B1J_HUMAN4.099e-3185.71Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ ... [more]
H2B12_XENLA4.099e-3185.71Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2[more]
H2B3_TIGCA5.354e-3185.71Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2[more]
H2B2E_MOUSE5.354e-3184.42Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be ... [more]
H2B1_TIGCA5.354e-3185.71Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3... [more]
H2B1C_HUMAN5.354e-3186.84Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]
H2B_PLADU6.992e-3185.71Histone H2B OS=Platynereis dumerilii PE=3 SV=2[more]
H2B_LITVA6.992e-3185.71Histone H2B (Fragments) OS=Litopenaeus vannamei PE... [more]
H2B_DROYA6.992e-3185.71Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832748 ID=CF832748; Name=CF832748; organism=Citrus sinensis; type=EST; length=473bp
TTTTTTTTTTTTTTTTTCGAAATCATATTTCATTTTCATATTCTACCATA
ATGAACATGCACATCACCTGGATCAGGTCCAAATTTCTAGTACATCCAAA
CAAACCCTAAAAATCCACCAAAGATTTGAAAACACAAAACATAAAAACGA
CTTCATCTAGTAAAATTAAAGGCCTAAACTACTAACTACACAAATCACAT
AACACCCGAATTCACCGACCGATGCAACAAACTTCCTTCAAGAAGAAGTA
AACTTAGTAACAGCTTTGGTACCCTCAGAAACAGCGTGCTTAGCCAGCTC
ACCAGGAAGTACAAGTCTCACAGCGGTCTGAATTTCCCGAGATGTAATCG
TCGGCTTCTTATTGTACCTTGCAAGCCTAGAAGCTTCCTGGGCAAGCTTC
TCGAAAATATCGTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTCGA
GATTCCGATATCGGGATGTACCT
back to top