CF832749

Overview
NameCF832749
Unique NameCF832749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_CAIMO (Histone H2B OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.451e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVR +LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   48 QVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRSLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_ASTPE (Histone H2B OS=Asterina pectinifera PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.451e-31
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   44 QVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 121
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B7_CHICK (Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.451e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   48 QVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1N_BOVIN (Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 3.201e-31
Identity = 67/78 (85.90%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAMG MNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   48 QVHPDTGISSKAMGNMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1K_MACFA (Histone H2B type 1-K OS=Macaca fascicularis GN=HIST1H2BK PE=2 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 3.201e-31
Identity = 66/78 (84.62%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            +VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   48 RVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_SIPNU (Histone H2B OS=Sipunculus nudus GN=H2B PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 4.181e-31
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+NDIFE++A EASRLA YN++ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   45 QVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNRRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BFS_HUMAN (Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 4.181e-31
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAMGIMNSF+NDIFE++A EASRL  YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   48 QVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLPHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B4_CAEEL (Probable histone H2B 4 OS=Caenorhabditis elegans GN=his-48 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 4.181e-31
Identity = 64/78 (82.05%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD G+SSKAM IMNSF+ND+FE++A EASRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   45 QVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B3_CAEEL (Probable histone H2B 3 OS=Caenorhabditis elegans GN=his-41 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 4.181e-31
Identity = 64/78 (82.05%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD G+SSKAM IMNSF+ND+FE++A EASRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   45 QVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_RHASC (Histone H2B OS=Rhacophorus schlegelii GN=histh2b PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 5.461e-31
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   48 QVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
The following BLAST results are available for this feature:
BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B_CAIMO2.451e-3185.90Histone H2B OS=Cairina moschata PE=3 SV=2[more]
H2B_ASTPE2.451e-3184.62Histone H2B OS=Asterina pectinifera PE=1 SV=2[more]
H2B7_CHICK2.451e-3185.90Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=... [more]
H2B1N_BOVIN3.201e-3185.90Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE... [more]
H2B1K_MACFA3.201e-3184.62Histone H2B type 1-K OS=Macaca fascicularis GN=HIS... [more]
H2B_SIPNU4.181e-3184.62Histone H2B OS=Sipunculus nudus GN=H2B PE=1 SV=2[more]
H2BFS_HUMAN4.181e-3184.62Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1... [more]
H2B4_CAEEL4.181e-3182.05Probable histone H2B 4 OS=Caenorhabditis elegans G... [more]
H2B3_CAEEL4.181e-3182.05Probable histone H2B 3 OS=Caenorhabditis elegans G... [more]
H2B_RHASC5.461e-3184.62Histone H2B OS=Rhacophorus schlegelii GN=histh2b P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA
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