CF832749 | Citrus Genome Database

Overview


Name	CF832749
Unique Name	CF832749
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	474

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1113	contig	Csv1_Contig1113:319..791.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_MARGL (Histone H2B, sperm OS=Marthasterias glacialis PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 5.461e-31
Identity = 65/78 (83.33%), Postives = 73/78 (93.59%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM IMNSF+NDIFE++A EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   43 QVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 120

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_ASTRU (Histone H2B, gonadal OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 5.461e-31
Identity = 65/78 (83.33%), Postives = 73/78 (93.59%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM IMNSF+NDIFE++A EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   44 QVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 121

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_CAEEL (Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 5.461e-31
Identity = 64/78 (82.05%), Postives = 73/78 (93.59%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD G+SSKAM IMNSF+ND+FE++A EASRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   45 QVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_CAEEL (Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 PE=1 SV=4)

HSP 1 Score: 133.265 bits (334), Expect = 5.461e-31
Identity = 64/78 (82.05%), Postives = 73/78 (93.59%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD G+SSKAM IMNSF+ND+FE++A EASRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   44 QVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 121

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_ACRFO (Histone H2B OS=Acropora formosa PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.132e-31
Identity = 65/78 (83.33%), Postives = 74/78 (94.87%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAMGIMNSF+NDIFE++A E+SRL+ YNKK TI+SREIQTA+RL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   47 QVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRLLLPGELAKHAVSEGTKAVTKYTSS 124

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BL3_STRPU (Late histone H2B.L3 OS=Strongylocentrotus purpuratus PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 7.132e-31
Identity = 64/78 (82.05%), Postives = 73/78 (93.59%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM IMNSF+ND+FE++A EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   45 QVHPDTGISSRAMSIMNSFVNDVFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 122

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1A_MOUSE (Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba PE=2 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 7.132e-31
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+ DIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 QVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B11_XENLA (Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 7.132e-31
Identity = 65/78 (83.33%), Postives = 73/78 (93.59%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+ND+FE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   48 QVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_URECA (Histone H2B OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.217e-30
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+NDIFE++A EASRLA YN++ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+T S
Sbjct:   45 QVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNRRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTQS 122

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_HOLTU (Histone H2B OS=Holothuria tubulosa PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.217e-30
Identity = 64/78 (82.05%), Postives = 73/78 (93.59%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM IMNSF+NDIFE++A EASRLA YN+K TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   45 QVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNRKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 122

The following BLAST results are available for this feature:

BLAST of CF832749 vs. ExPASy Swiss-Prot

BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204


Match Name	E-value	Identity	Description
H2B_MARGL	5.461e-31	83.33	Histone H2B, sperm OS=Marthasterias glacialis PE=1...	[more]
H2B_ASTRU	5.461e-31	83.33	Histone H2B, gonadal OS=Asterias rubens PE=1 SV=2	[more]
H2B2_CAEEL	5.461e-31	82.05	Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 P...	[more]
H2B1_CAEEL	5.461e-31	82.05	Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 ...	[more]
H2B_ACRFO	7.132e-31	83.33	Histone H2B OS=Acropora formosa PE=3 SV=1	[more]
H2BL3_STRPU	7.132e-31	82.05	Late histone H2B.L3 OS=Strongylocentrotus purpurat...	[more]
H2B1A_MOUSE	7.132e-31	84.62	Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba ...	[more]
H2B11_XENLA	7.132e-31	83.33	Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2	[more]
H2B_URECA	1.217e-30	83.33	Histone H2B OS=Urechis caupo PE=3 SV=2	[more]
H2B_HOLTU	1.217e-30	82.05	Histone H2B OS=Holothuria tubulosa PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA