CF832749

Overview
NameCF832749
Unique NameCF832749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BL1_PSAMI (Late histone H2B.2.1 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.217e-30
Identity = 64/78 (82.05%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+ND+FE++A EASRLA YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   46 QVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 123          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1A_RAT (Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1h2ba PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.217e-30
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+ DIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 QVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BL4_STRPU (Late histone H2B.L4 (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.075e-30
Identity = 63/78 (80.77%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM IMNSF+ND+FE++A EASRLA+YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   29 QVHPDTGISSRAMSIMNSFVNDVFERIAGEASRLAQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 106          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BL2_PSAMI (Late histone H2B.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.075e-30
Identity = 63/78 (80.77%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+ND+FE++A EASRL++YNKK TI+SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   46 QVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLSQYNKKSTISSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 123          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BL1_STRPU (Late histone H2B.L1 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.075e-30
Identity = 63/78 (80.77%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM IMNSF+ND+FE++A EASRLA YNKK TITSRE+QT VRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   45 QVHPDTGISSRAMSIMNSFVNDVFERIAAEASRLAHYNKKSTITSREVQTVVRLLLPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_OLILU (Histone H2B OS=Olisthodiscus luteus PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 2.710e-30
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS + M IMNSFINDIFE+LA EASRLARYNK+ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTKFTS+
Sbjct:   37 QVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BE_STRPU (Histone H2B, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 3.540e-30
Identity = 64/78 (82.05%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM IMNSF+NDIFE++A E+SRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   46 QVHPDTGISSRAMVIMNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 123          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BE2_PSAMI (Histone H2B.2, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.623e-30
Identity = 64/78 (82.05%), Postives = 74/78 (94.87%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM IMNSF+NDIFE++A E+SRLA+YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   45 QVHPDTGISSRAMIIMNSFVNDIFERIAGESSRLAQYNKKSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTTS 122          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1A_HUMAN (Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 7.885e-30
Identity = 64/78 (82.05%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAM IMNSF+ DIFE++A EASRLA Y+K+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 QVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYSKRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_EUPCR (Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.345e-29
Identity = 62/78 (79.49%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHP+ G+S K+M IMNSFINDIFEK+A EAS+L RYNKK T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 QVHPETGVSKKSMSIMNSFINDIFEKIALEASKLVRYNKKHTLSSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 113          
The following BLAST results are available for this feature:
BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2BL1_PSAMI1.217e-3082.05Late histone H2B.2.1 OS=Psammechinus miliaris PE=3... [more]
H2B1A_RAT1.217e-3084.62Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1... [more]
H2BL4_STRPU2.075e-3080.77Late histone H2B.L4 (Fragment) OS=Strongylocentrot... [more]
H2BL2_PSAMI2.075e-3080.77Late histone H2B.2.2 OS=Psammechinus miliaris PE=3... [more]
H2BL1_STRPU2.075e-3080.77Late histone H2B.L1 OS=Strongylocentrotus purpurat... [more]
H2B_OLILU2.710e-3083.33Histone H2B OS=Olisthodiscus luteus PE=1 SV=2[more]
H2BE_STRPU3.540e-3082.05Histone H2B, embryonic OS=Strongylocentrotus purpu... [more]
H2BE2_PSAMI4.623e-3082.05Histone H2B.2, embryonic OS=Psammechinus miliaris ... [more]
H2B1A_HUMAN7.885e-3082.05Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA ... [more]
H2B_EUPCR1.345e-2979.49Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA
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