CF832749

Overview
NameCF832749
Unique NameCF832749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_RAT (Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.345e-29
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISSKAMGIMNSF+NDIFE++A E  RLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   48 QVHPDTGISSKAMGIMNSFVNDIFERIAGER-RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 124
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BE1_PSAMI (Histone H2B.1, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.757e-29
Identity = 62/78 (79.49%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD G+SS+AM IMNSF+NDIFE++A EASRL +YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T++
Sbjct:   45 QVHPDTGVSSRAMTIMNSFVNDIFERIAGEASRLTQYNKKSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTA 122
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_GIBZE (Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 2.996e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   58 QVHPDTGISNRAMSILNSFVNDIFERVASEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_ROSNE (Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   57 QVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 134
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_PODAN (Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   58 QVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_NEUCR (Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   58 QVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_NEOFI (Histone H2B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htb1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   61 QVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_MAGGR (Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   58 QVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_EMENI (Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   61 QVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_COCIM (Histone H2B OS=Coccidioides immitis GN=HTB1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   60 QVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 137
The following BLAST results are available for this feature:
BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B1_RAT1.345e-2984.62Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2BE1_PSAMI1.757e-2979.49Histone H2B.1, embryonic OS=Psammechinus miliaris ... [more]
H2B_GIBZE2.996e-2978.21Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3[more]
H2B_ROSNE3.913e-2978.21Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV... [more]
H2B_PODAN3.913e-2978.21Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=... [more]
H2B_NEUCR3.913e-2978.21Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4[more]
H2B_NEOFI3.913e-2978.21Histone H2B OS=Neosartorya fischeri (strain ATCC 1... [more]
H2B_MAGGR3.913e-2978.21Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=... [more]
H2B_EMENI3.913e-2978.21Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV... [more]
H2B_COCIM3.913e-2978.21Histone H2B OS=Coccidioides immitis GN=HTB1 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA
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