CF832749

Overview
NameCF832749
Unique NameCF832749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_CHAGB (Histone H2B OS=Chaetomium globosum GN=HTB1 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   58 QVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_ASPTN (Histone H2B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=htb1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   61 QVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_ASPOR (Histone H2B OS=Aspergillus oryzae GN=htb1 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   62 QVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 139
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_ASPNC (Histone H2B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=htb1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   62 QVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 139
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_ASPFU (Histone H2B OS=Aspergillus fumigatus GN=htb1 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   61 QVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_ASPCL (Histone H2B OS=Aspergillus clavatus GN=htb1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   61 QVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_AJECA (Histone H2B OS=Ajellomyces capsulata GN=HTB1 PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 61/78 (78.21%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   59 QVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 136
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BS1_STRPU (Histone H2B.1, sperm OS=Strongylocentrotus purpuratus PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 6.675e-29
Identity = 59/78 (75.64%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+ M IMNSF+ND+FE++A EASRL +YN++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   62 QVHPDTGISSRGMSIMNSFVNDVFERVAAEASRLTKYNRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 139
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: HSB1_PICST (Histone H2B.1 OS=Pichia stipitis GN=HTB1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.718e-29
Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   52 QTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 129
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_USTMA (Histone H2B OS=Ustilago maydis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 8.718e-29
Identity = 60/78 (76.92%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS+KAM I+NSF+ DIFE++A EAS+LA YNKK TI+SREIQTAVRL+LPGEL+KHA+SEGTK+VTKF+SS
Sbjct:   64 QVHPDTGISNKAMAILNSFVQDIFERIATEASKLASYNKKSTISSREIQTAVRLILPGELSKHAISEGTKSVTKFSSS 141
The following BLAST results are available for this feature:
BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B_CHAGB3.913e-2978.21Histone H2B OS=Chaetomium globosum GN=HTB1 PE=3 SV... [more]
H2B_ASPTN3.913e-2978.21Histone H2B OS=Aspergillus terreus (strain NIH 262... [more]
H2B_ASPOR3.913e-2978.21Histone H2B OS=Aspergillus oryzae GN=htb1 PE=3 SV=... [more]
H2B_ASPNC3.913e-2978.21Histone H2B OS=Aspergillus niger (strain CBS 513.8... [more]
H2B_ASPFU3.913e-2978.21Histone H2B OS=Aspergillus fumigatus GN=htb1 PE=3 ... [more]
H2B_ASPCL3.913e-2978.21Histone H2B OS=Aspergillus clavatus GN=htb1 PE=3 S... [more]
H2B_AJECA3.913e-2978.21Histone H2B OS=Ajellomyces capsulata GN=HTB1 PE=3 ... [more]
H2BS1_STRPU6.675e-2975.64Histone H2B.1, sperm OS=Strongylocentrotus purpura... [more]
HSB1_PICST8.718e-2976.92Histone H2B.1 OS=Pichia stipitis GN=HTB1 PE=3 SV=1[more]
H2B_USTMA8.718e-2976.92Histone H2B OS=Ustilago maydis GN=HTB1 PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA
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