CF832749

Overview
NameCF832749
Unique NameCF832749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B6_WHEAT (Histone H2B.6 OS=Triticum aestivum GN=TH123 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 8.718e-29
Identity = 62/76 (81.58%), Postives = 71/76 (93.42%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFT 228
            Q+ P++GISSK+M I+NS INDIFEKLA E+++LARYNKKPTITSREIQTAVRLV PGELAKHAVSEGTKAVT+FT
Sbjct:   44 QIDPNMGISSKSMSIINSIINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVFPGELAKHAVSEGTKAVTRFT 119          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_PICST (Histone H2B.2 OS=Pichia stipitis GN=HTB2 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 8.718e-29
Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   52 QTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 129          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_CANAL (Histone H2B.2 OS=Candida albicans GN=HTB2 PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 8.718e-29
Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   51 QTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 128          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_LODEL (Histone H2B OS=Lodderomyces elongisporus GN=HTB1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.139e-28
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++RE+QTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   52 QTHPDTGISQKAMSIMNSFVNDIFERIASEASKLAAYNKKSTISAREVQTAVRLILPGELAKHAVSEGTRAVTKYSSA 129          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_CANAL (Histone H2B.1 OS=Candida albicans GN=HTB1 PE=3 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.139e-28
Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   51 QTHPDTGISQKAMSIMNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 128          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_DEBHA (Histone H2B.2 OS=Debaryomyces hansenii GN=HTB2 PE=3 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.487e-28
Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   50 QTHPDTGISQKAMSIMNSFVNDIFERIAGEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 127          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_SCHPO (Histone H2B-alpha OS=Schizosaccharomyces pombe GN=htb1 PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.487e-28
Identity = 60/78 (76.92%), Postives = 73/78 (93.59%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQTAVRL+LPGELAKHAV+EGTK+VTK++SS
Sbjct:   47 QVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTISSREIQTAVRLILPGELAKHAVTEGTKSVTKYSSS 124          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_DEBHA (Histone H2B.1 OS=Debaryomyces hansenii GN=HTB1 PE=3 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.487e-28
Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++S+
Sbjct:   51 QTHPDTGISQKAMSIMNSFVNDIFERIAGEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSA 128          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_AGABI (Histone H2B OS=Agaricus bisporus GN=htbA PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.942e-28
Identity = 59/77 (76.62%), Postives = 72/77 (93.51%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 231
            QVHPD GIS+KAM I+NSF+NDIFE++A EAS+LA Y+KK TI+SREIQT+VRL+LPGELAKHA+SEGTK+VTKF+S
Sbjct:   64 QVHPDTGISNKAMAILNSFVNDIFERIATEASKLASYSKKSTISSREIQTSVRLILPGELAKHAISEGTKSVTKFSS 140          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BS1_PSAMI (Histone H2B.1, sperm OS=Psammechinus miliaris PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.942e-28
Identity = 57/78 (73.08%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM +MNSF+ND+FE++A EA RL  YN++ T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   59 QVHPDTGISSRAMSVMNSFVNDVFERIASEAGRLTTYNRRNTVSSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 136          
The following BLAST results are available for this feature:
BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B6_WHEAT8.718e-2981.58Histone H2B.6 OS=Triticum aestivum GN=TH123 PE=1 S... [more]
H2B2_PICST8.718e-2976.92Histone H2B.2 OS=Pichia stipitis GN=HTB2 PE=3 SV=1[more]
H2B2_CANAL8.718e-2976.92Histone H2B.2 OS=Candida albicans GN=HTB2 PE=3 SV=... [more]
H2B_LODEL1.139e-2875.64Histone H2B OS=Lodderomyces elongisporus GN=HTB1 P... [more]
H2B1_CANAL1.139e-2876.92Histone H2B.1 OS=Candida albicans GN=HTB1 PE=3 SV=... [more]
H2B2_DEBHA1.487e-2876.92Histone H2B.2 OS=Debaryomyces hansenii GN=HTB2 PE=... [more]
H2B1_SCHPO1.487e-2876.92Histone H2B-alpha OS=Schizosaccharomyces pombe GN=... [more]
H2B1_DEBHA1.487e-2876.92Histone H2B.1 OS=Debaryomyces hansenii GN=HTB1 PE=... [more]
H2B_AGABI1.942e-2876.62Histone H2B OS=Agaricus bisporus GN=htbA PE=2 SV=3[more]
H2BS1_PSAMI1.942e-2873.08Histone H2B.1, sperm OS=Psammechinus miliaris PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA
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