CF832749

Overview
NameCF832749
Unique NameCF832749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BS1_PARAN (Histone H2B.1, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.942e-28
Identity = 57/78 (73.08%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM +MNSF+ND+FE++A EA RL  YN++ T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   67 QVHPDTGISSRAMSVMNSFVNDVFERIAAEAGRLTTYNRRSTVSSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 144
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_CANGA (Histone H2B.2 OS=Candida glabrata GN=HTB2 PE=3 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.942e-28
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   51 QTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 128
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_ASHGO (Histone H2B.2 OS=Ashbya gossypii GN=HTB2 PE=3 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.942e-28
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   47 QTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 124
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_CANGA (Histone H2B.1 OS=Candida glabrata GN=HTB1 PE=3 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.942e-28
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   49 QTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 126
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_ASHGO (Histone H2B.1 OS=Ashbya gossypii GN=HTB1 PE=3 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 1.942e-28
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   52 QTHPDTGISQKSMSILNSFVNDIFERIASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 129
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_YEAST (Histone H2B.2 OS=Saccharomyces cerevisiae GN=HTB2 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 2.537e-28
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   51 QTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 128
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_YEAST (Histone H2B.1 OS=Saccharomyces cerevisiae GN=HTB1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 2.537e-28
Identity = 59/78 (75.64%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS K+M I+NSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   51 QTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 128
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BS3_PARAN (Histone H2B.3, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 4.327e-28
Identity = 58/78 (74.36%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM +MNSF+ND+FE++A EASRL   N++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   71 QVHPDTGISSRAMSVMNSFVNDVFERIASEASRLTSANRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 148
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_KLULA (Histone H2B.2 OS=Kluyveromyces lactis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 5.651e-28
Identity = 58/78 (74.36%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   52 QTHPDTGISQKSMSILNSFVNDIFERIATESSKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 129
[Close]
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_KLULA (Histone H2B.1 OS=Kluyveromyces lactis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 5.651e-28
Identity = 58/78 (74.36%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   52 QTHPDTGISQKSMSILNSFVNDIFERIATESSKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 129
The following BLAST results are available for this feature:
BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2BS1_PARAN1.942e-2873.08Histone H2B.1, sperm OS=Parechinus angulosus PE=1 ... [more]
H2B2_CANGA1.942e-2875.64Histone H2B.2 OS=Candida glabrata GN=HTB2 PE=3 SV=... [more]
H2B2_ASHGO1.942e-2875.64Histone H2B.2 OS=Ashbya gossypii GN=HTB2 PE=3 SV=3[more]
H2B1_CANGA1.942e-2875.64Histone H2B.1 OS=Candida glabrata GN=HTB1 PE=3 SV=... [more]
H2B1_ASHGO1.942e-2875.64Histone H2B.1 OS=Ashbya gossypii GN=HTB1 PE=3 SV=3[more]
H2B2_YEAST2.537e-2875.64Histone H2B.2 OS=Saccharomyces cerevisiae GN=HTB2 ... [more]
H2B1_YEAST2.537e-2875.64Histone H2B.1 OS=Saccharomyces cerevisiae GN=HTB1 ... [more]
H2BS3_PARAN4.327e-2874.36Histone H2B.3, sperm OS=Parechinus angulosus PE=1 ... [more]
H2B2_KLULA5.651e-2874.36Histone H2B.2 OS=Kluyveromyces lactis GN=HTB1 PE=3... [more]
H2B1_KLULA5.651e-2874.36Histone H2B.1 OS=Kluyveromyces lactis GN=HTB1 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA
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