CF832749

Overview
NameCF832749
Unique NameCF832749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_TETPY (Histone H2B OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 7.380e-28
Identity = 57/78 (73.08%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD+GIS KAM IMNSFIND FE++A E+S+L R+NK+ T++SRE+QTAV+L+LPGELA+HA+SEGTKAVTKF+SS
Sbjct:   42 QVHPDVGISKKAMNIMNSFINDSFERIALESSKLVRFNKRRTLSSREVQTAVKLLLPGELARHAISEGTKAVTKFSSS 119          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BS2_PARAN (Histone H2B.2, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 7.380e-28
Identity = 58/78 (74.36%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+AM +MNSF+ND+FE++A EASRL   N++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   66 QVHPDTGISSRAMSVMNSFVNDVFERIAGEASRLTSANRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 143          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_TETTH (Histone H2B.2 OS=Tetrahymena thermophila GN=HTB2 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 7.380e-28
Identity = 57/78 (73.08%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD+GIS KAM IMNSFIND FE++A E+S+L R+NK+ T++SRE+QTAV+L+LPGELA+HA+SEGTKAVTKF+SS
Sbjct:   43 QVHPDVGISKKAMNIMNSFINDSFERIALESSKLVRFNKRRTLSSREVQTAVKLLLPGELARHAISEGTKAVTKFSSS 120          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_TETTH (Histone H2B.1 OS=Tetrahymena thermophila GN=HTB1 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 7.380e-28
Identity = 57/78 (73.08%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD+GIS KAM IMNSFIND FE++A E+S+L R+NK+ T++SRE+QTAV+L+LPGELA+HA+SEGTKAVTKF+SS
Sbjct:   43 QVHPDVGISKKAMNIMNSFINDSFERIALESSKLVRFNKRRTLSSREVQTAVKLLLPGELARHAISEGTKAVTKFSSS 120          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BS2_LYTPI (Histone H2B.2, sperm OS=Lytechinus pictus PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 1.259e-27
Identity = 58/78 (74.36%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+ M +MNSF+ND+FE++A EASRL + N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   65 QVHPDTGISSRGMSVMNSFVNDVFERIAGEASRLCQANRRRTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 142          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_CRYNE (Histone H2B OS=Cryptococcus neoformans GN=HTB1 PE=3 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 1.644e-27
Identity = 57/78 (73.08%), Postives = 72/78 (92.31%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS+KAM I+NSF++DIFE++A EAS+LA YN + TI+SREIQT+VRL+LPGEL+KHA+SEGTKAVTK++SS
Sbjct:   61 QVHPDTGISNKAMAILNSFVSDIFERIATEASKLASYNHRSTISSREIQTSVRLILPGELSKHAISEGTKAVTKYSSS 138          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BS2_STRPU (Histone H2B.2, sperm OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.644e-27
Identity = 59/78 (75.64%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GISS+ M +MNSF+NDIF ++A EASRL R N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   66 QVHPDTGISSRGMSVMNSFVNDIFGRIAGEASRLTRANRRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 143          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_PICGU (Histone H2B.2 OS=Pichia guilliermondii GN=HTB2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.147e-27
Identity = 57/78 (73.08%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSE T+ +TK++S+
Sbjct:   50 QTHPDTGISQKAMSIMNSFVNDIFERVASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEATRTITKYSSA 127          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_PICGU (Histone H2B.1 OS=Pichia guilliermondii GN=HTB1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.147e-27
Identity = 57/78 (73.08%), Postives = 69/78 (88.46%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            Q HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSE T+ +TK++S+
Sbjct:   50 QTHPDTGISQKAMSIMNSFVNDIFERVASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEATRTITKYSSA 127          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BS2_PSAMI (Histone H2B.2, sperm OS=Psammechinus miliaris PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 2.805e-27
Identity = 58/80 (72.50%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*R 240
            QVHPD GISS+ M +MNSF+ND+FE++A EASRL   N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T++ R
Sbjct:   64 QVHPDTGISSRGMSVMNSFVNDVFERIAGEASRLTSANRRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTARR 143          
The following BLAST results are available for this feature:
BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B_TETPY7.380e-2873.08Histone H2B OS=Tetrahymena pyriformis PE=1 SV=2[more]
H2BS2_PARAN7.380e-2874.36Histone H2B.2, sperm OS=Parechinus angulosus PE=1 ... [more]
H2B2_TETTH7.380e-2873.08Histone H2B.2 OS=Tetrahymena thermophila GN=HTB2 P... [more]
H2B1_TETTH7.380e-2873.08Histone H2B.1 OS=Tetrahymena thermophila GN=HTB1 P... [more]
H2BS2_LYTPI1.259e-2774.36Histone H2B.2, sperm OS=Lytechinus pictus PE=2 SV=... [more]
H2B_CRYNE1.644e-2773.08Histone H2B OS=Cryptococcus neoformans GN=HTB1 PE=... [more]
H2BS2_STRPU1.644e-2775.64Histone H2B.2, sperm OS=Strongylocentrotus purpura... [more]
H2B2_PICGU2.147e-2773.08Histone H2B.2 OS=Pichia guilliermondii GN=HTB2 PE=... [more]
H2B1_PICGU2.147e-2773.08Histone H2B.1 OS=Pichia guilliermondii GN=HTB1 PE=... [more]
H2BS2_PSAMI2.805e-2772.50Histone H2B.2, sperm OS=Psammechinus miliaris PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA
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