CF832749

Overview
NameCF832749
Unique NameCF832749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_YARLI (Histone H2B OS=Yarrowia lipolytica GN=HTB1 PE=3 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 4.050e-26
Identity = 55/77 (71.43%), Postives = 67/77 (87.01%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 231
            Q HPD GIS++AM IMNSF+NDIFE++A EAS+LA Y KK TITSREIQTAVRL+LPGELAKHA  +GT+AV K+++
Sbjct:   60 QTHPDTGISTRAMSIMNSFVNDIFERVATEASKLATYTKKSTITSREIQTAVRLILPGELAKHATGDGTRAVAKYST 136          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_PHANO (Histone H2B OS=Phaeosphaeria nodorum GN=HTB1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.050e-26
Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFIND--IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPD GIS++AM I+NSF+    IFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   59 QVHPDTGISNRAMSILNSFVTTTHIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.336e-23
Identity = 48/75 (64.00%), Postives = 67/75 (89.33%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKF 225
            QVHPD+GI+SKAM ++N F+ D+FE++AQEA+RL+ Y K+ T++SREI+ AVRLVLPGEL++HAV+EG+KAV+ F
Sbjct:  161 QVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNF 235          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_TRYCR (Histone H2B OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.436e-17
Identity = 41/76 (53.95%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    4 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 231
            ++  + +S + M I+NSF+ND+FE++A EA+ + R NKK T+ +RE+QTAVRLVLP +LAKHA++EGTKAV+  +S
Sbjct:   37 INNHMSMSGRTMKIVNSFVNDLFERIACEAATVVRVNKKRTLGARELQTAVRLVLPADLAKHAMAEGTKAVSHASS 112          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BV3_DICDI (Histone H2B.v3 OS=Dictyostelium discoideum GN=H2Bv3 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.705e-16
Identity = 40/68 (58.82%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   22 ISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKF 225
            ISSKAM +MNSF++DIF+++A EAS LA+  K+ T+ SR+IQ AVR++L GELAKHA+ +G  AV K+
Sbjct:   80 ISSKAMSVMNSFVHDIFDRIATEASGLAKKKKRQTLHSRDIQVAVRIILTGELAKHAILQGMTAVNKY 147          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_LEIEN (Histone H2B OS=Leishmania enriettii PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16
Identity = 38/72 (52.78%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    4 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVT 219
            ++  + +S + M I+NS++ND+ E++A EA+ + R +KK T+ +RE+QTAVRLVLP ELAKHA++EGTKAV+
Sbjct:   36 INSHMSMSGRTMKIVNSYVNDVMERIAMEAASIVRAHKKLTLGAREVQTAVRLVLPPELAKHAMAEGTKAVS 107          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_ENTIV (Histone H2B OS=Entamoeba invadens PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15
Identity = 38/73 (52.05%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    4 VHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 222
            V PDIGI+  ++ +M+SF+ DIFE++A +AS L R  +K T+T++EI+TA +L+L G+L KHAVSEG  AV +
Sbjct:   50 VFPDIGITLPSISVMDSFVRDIFERIAMDASSLTRNYQKSTLTTKEIETATKLILKGDLNKHAVSEGQSAVKR 122          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B_LILLO (Histone H2B.1 OS=Lilium longiflorum PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.165e-15
Identity = 40/77 (51.95%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 231
            QV P++GISSK+M IMN+F+   F+ +A+EAS LA+Y+KK TIT +E++ AV+LVLP +L ++A  +G +AV  F S
Sbjct:   64 QVRPELGISSKSMLIMNNFVVHNFQNIAKEASILAQYSKKKTITVKELKAAVKLVLPHQLLEYADRDGDRAVHNFES 140          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BFM_HUMAN (Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.723e-14
Identity = 36/74 (48.65%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 222
            QVH  + +S +A+ +M+S I+DI +++A EA +LA Y K+ TITSR+IQ AVRL+LPG++ K A ++GT A  +
Sbjct:  173 QVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALR 246          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2BWT_HUMAN (Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.644e-14
Identity = 37/74 (50.00%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 222
            QVH  + +S +A+ +M+S ++DI +++A EA RLAR  K+ TIT+ E + AVRL+LPG++ K A SEGTKAV +
Sbjct:   91 QVHQGLSLSREAVSVMDSLVHDILDRIATEAGRLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLR 164          
The following BLAST results are available for this feature:
BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B_YARLI4.050e-2671.43Histone H2B OS=Yarrowia lipolytica GN=HTB1 PE=3 SV... [more]
H2B_PHANO4.050e-2673.75Histone H2B OS=Phaeosphaeria nodorum GN=HTB1 PE=3 ... [more]
H2B2_ARATH9.336e-2364.00Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170... [more]
H2B_TRYCR3.436e-1753.95Histone H2B OS=Trypanosoma cruzi PE=3 SV=1[more]
H2BV3_DICDI1.705e-1658.82Histone H2B.v3 OS=Dictyostelium discoideum GN=H2Bv... [more]
H2B_LEIEN4.962e-1652.78Histone H2B OS=Leishmania enriettii PE=2 SV=1[more]
H2B_ENTIV1.444e-1552.05Histone H2B OS=Entamoeba invadens PE=2 SV=1[more]
H2B_LILLO7.165e-1551.95Histone H2B.1 OS=Lilium longiflorum PE=1 SV=1[more]
H2BFM_HUMAN2.723e-1448.65Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2... [more]
H2BWT_HUMAN4.644e-1450.00Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA
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