CF832749 | Citrus Genome Database

Overview


Name	CF832749
Unique Name	CF832749
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	474

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1113	contig	Csv1_Contig1113:319..791.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_WHEAT (Histone H2B.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 9.001e-34
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   73 QVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSJ (Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H2B.7 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   76 QVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSI (Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B.7 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   76 QVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSJ (Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   76 QVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSI (Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   76 QVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B3_WHEAT (Histone H2B.3 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 QVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 138

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSJ (Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   76 QVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSI (Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   76 QVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSJ (Histone H2B.10 OS=Oryza sativa subsp. japonica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   76 QVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153

[Close]

BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSI (Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1

Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   76 QVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153

The following BLAST results are available for this feature:

BLAST of CF832749 vs. ExPASy Swiss-Prot

BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204


Match Name	E-value	Identity	Description
H2B2_WHEAT	9.001e-34	92.31	Histone H2B.2 OS=Triticum aestivum PE=1 SV=2	[more]
H2B7_ORYSJ	2.005e-33	91.03	Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H...	[more]
H2B7_ORYSI	2.005e-33	91.03	Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B...	[more]
H2B4_ORYSJ	2.005e-33	91.03	Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H...	[more]
H2B4_ORYSI	2.005e-33	91.03	Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B...	[more]
H2B3_WHEAT	2.005e-33	91.03	Histone H2B.3 OS=Triticum aestivum PE=1 SV=3	[more]
H2B3_ORYSJ	2.005e-33	91.03	Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H...	[more]
H2B3_ORYSI	2.005e-33	91.03	Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B...	[more]
H2B10_ORYSJ	2.005e-33	91.03	Histone H2B.10 OS=Oryza sativa subsp. japonica GN=...	[more]
H2B10_ORYSI	2.005e-33	91.03	Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA