CF832772

Overview
NameCF832772
Unique NameCF832772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_HUMAN (40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            +NN+VLFD+ATYDKL  E P YKLITP+++S+R++I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_BOVIN (40S ribosomal protein S25 OS=Bos taurus GN=RPS25 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 43/70 (61.43%), Postives = 60/70 (85.71%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            +NN+VLFD+ATYDKL  E P YKLITP+++S+R++I GSLAR A++EL+++GLI++VS H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_DANRE (40S ribosomal protein S25 OS=Danio rerio GN=rps25 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.179e-19
Identity = 43/70 (61.43%), Postives = 59/70 (84.29%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            +NN+VLFD+ATYDKL  E P YKLITP+++S+R++I GSLAR A++EL+ +GLI++VS H +Q IYTR T
Sbjct:   43 LNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALQELLGKGLIKLVSKHRAQVIYTRNT 112          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_ICTPU (40S ribosomal protein S25 OS=Ictalurus punctatus GN=rps25 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.341e-19
Identity = 42/70 (60.00%), Postives = 59/70 (84.29%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            +NN+VLFD+ATYDKL  E P YKLITP+++S+R++I GSLAR A+ EL+++G+I++VS H +Q IYTR T
Sbjct:   43 LNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALLELLSKGMIKLVSKHRAQVIYTRNT 112          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_DROME (40S ribosomal protein S25 OS=Drosophila melanogaster GN=RpS25 PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 5.368e-18
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            +NN VLFD+ATY+KL  E P YKLITPS++S+R++I GSLA++A+ EL  +GLI+ V  H SQ IYTRAT
Sbjct:   43 LNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRAT 112          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_SPOFR (40S ribosomal protein S25 OS=Spodoptera frugiperda GN=RpS25 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.544e-17
Identity = 40/70 (57.14%), Postives = 55/70 (78.57%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            +NN VLFD+ TY+KL  E P+YKLITP+++S+R+++ GSLAR+A+ EL  +GLI+ V  H  Q IYTRAT
Sbjct:   43 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRAT 112          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_CAEEL (40S ribosomal protein S25 OS=Caenorhabditis elegans GN=rps-25 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.544e-17
Identity = 40/70 (57.14%), Postives = 54/70 (77.14%), Query Frame = -2
Query:  147 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 356
            +NNMVLFDQATYDKL  E   YKLITPS++S+R+++  SLA+  ++EL A+GL++ V  H  Q +YTRAT
Sbjct:   40 LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRAT 109          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_LEIIN (40S ribosomal protein S25 OS=Leishmania infantum GN=RPS25 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.048e-13
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = -2
Query:  153 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTR 356
            + N V+FD+ TYDKL SE PKYKLITPSI+SDR++I  S+A   +++L    LIR+VS  +  ++YTR
Sbjct:   36 LQNAVMFDKETYDKLRSEVPKYKLITPSIISDRLKIAVSIAAAGLKQLCREKLIRLVSCSSKTRVYTR 103          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_DICDI (40S ribosomal protein S25 OS=Dictyostelium discoideum GN=rps25 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.199e-13
Identity = 33/69 (47.83%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  150 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRA 356
            +NN +LFD+ TY KLL E P  K+IT +++S+R++ NGSLAR+AI+EL+++GLI+ +       +YT+A
Sbjct:   41 LNNAILFDKETYAKLLKEMPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKGHGNGVYTKA 109          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25A_YEAST (40S ribosomal protein S25-A OS=Saccharomyces cerevisiae GN=RPS25A PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.158e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  147 VLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 344
            V+ DQ  YD++L E P Y+ ++ S+L DR++I GSLAR A+R L   G+I+ +S H+ Q IYTRAT
Sbjct:   40 VILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRAT 105          
The following BLAST results are available for this feature:
BLAST of CF832772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS25_HUMAN1.669e-1961.4340S ribosomal protein S25 OS=Homo sapiens GN=RPS25... [more]
RS25_BOVIN1.669e-1961.4340S ribosomal protein S25 OS=Bos taurus GN=RPS25 P... [more]
RS25_DANRE2.179e-1961.4340S ribosomal protein S25 OS=Danio rerio GN=rps25 ... [more]
RS25_ICTPU6.341e-1960.0040S ribosomal protein S25 OS=Ictalurus punctatus G... [more]
RS25_DROME5.368e-1861.4340S ribosomal protein S25 OS=Drosophila melanogast... [more]
RS25_SPOFR4.544e-1757.1440S ribosomal protein S25 OS=Spodoptera frugiperda... [more]
RS25_CAEEL4.544e-1757.1440S ribosomal protein S25 OS=Caenorhabditis elegan... [more]
RS25_LEIIN1.048e-1352.9440S ribosomal protein S25 OS=Leishmania infantum G... [more]
RS25_DICDI5.199e-1347.8340S ribosomal protein S25 OS=Dictyostelium discoid... [more]
RS25A_YEAST1.158e-1250.0040S ribosomal protein S25-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02G14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832772 ID=CF832772; Name=CF832772; organism=Citrus sinensis; type=EST; length=534bp
TTTTTTTTGAATGTAAATAAAACTCTAAATTATACTTGTACACTCCCAAA
TAGATTCACAAGAAACAAAAATAATAGCAGTCAAAACACGGCAGAACGAA
ACTACATATAAACTAAGAAGCAAATATCAAAAGAGACTTAGGTGTTGGTT
GCCCTAGTGTAAATCTGCTGGCTTGCGTGAGCAGACACCATCCTGATCAA
ACCTCTAGCCATAAGCTCTCTTATTGCCTTCCTTGCAAGCGATCCATTAA
TCCTTACACGATCGGAGAGAATGGAAGGAGTGATAAGCTTGTATTTAGGA
GCCTCGGACAGAAGCTTGTCATAGGTTGCCTGATCAAACAACACCATGTT
GTTCACTTTCTCCTTTTGCTTTCCCTTGCTCCACTTCTTCTTCTTCTGCT
TGCCGCCTCCGGATTTCGCAGGCTTTGAGGATGGAGGGGGAGCCTTGTCC
TTCTTTGGAGCCATTGGATCTGATCAGACAGACAGAAGTGGAGAGCTCTG
AAACCAAAGTGAGATGTGGGAACAGAGGCGAGCC
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