CF832772

Overview
NameCF832772
Unique NameCF832772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length534
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832772_ssr384 microsatellite CF832772_ssr384:384..395. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832772_ssr475 microsatellite CF832772_ssr475:475..486. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1026 contig Csv1_Contig1026:1..534. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25B_YEAST (40S ribosomal protein S25-B OS=Saccharomyces cerevisiae GN=RPS25B PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.401e-12
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = -2
Query:  150 VLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRA 344
            V+ DQ  YD++L E P Y+ ++ S+L DR++I GSLAR A+R L   G+I+ +S H+ Q IYTRA
Sbjct:   40 VILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRA 104          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25B_SCHPO (40S ribosomal protein S25-B OS=Schizosaccharomyces pombe GN=rps25b PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.806e-12
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = -2
Query:  150 LFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRA 341
            +FD++  D++  E P +K I+ S+L DR++INGSLAR AIR+L  RG+I+ V  H+ Q IYTRA
Sbjct:   21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRA 84          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_CANGA (40S ribosomal protein S25 OS=Candida glabrata GN=RPS25 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.281e-11
Identity = 30/66 (45.45%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  147 VLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 344
            V+ DQ  +D++L E P Y+ ++ S+L DR++I GS+AR A+R L   G+I+ +S H+ Q IYTRA+
Sbjct:   40 VILDQEKFDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLEREGIIKPISKHSKQAIYTRAS 105          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25_ASHGO (40S ribosomal protein S25 OS=Ashbya gossypii GN=RPS25 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.281e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = -2
Query:  147 VLFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTRAT 344
            V+ DQ   D++L E P Y+ ++ S+L DR++I GS+AR A+R L   G+I+ +S H+ Q IYTRAT
Sbjct:   40 VILDQDKLDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLETEGIIKPISKHSKQAIYTRAT 105          
BLAST of CF832772 vs. ExPASy Swiss-Prot
Match: RS25A_SCHPO (40S ribosomal protein S25-A OS=Schizosaccharomyces pombe GN=rps25a PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = -2
Query:  153 LFDQATYDKLLSEAPKYKLITPSILSDRVRINGSLARKAIRELMARGLIRMVSAHASQQIYTR 341
            +FD++  D++  E P +K I+ S+L DR++INGSLAR AIR+L  RG+I+ V  H+ Q IYTR
Sbjct:   21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTR 83          
The following BLAST results are available for this feature:
BLAST of CF832772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS25B_YEAST4.401e-1249.2340S ribosomal protein S25-B OS=Saccharomyces cerev... [more]
RS25B_SCHPO9.806e-1251.5640S ribosomal protein S25-B OS=Schizosaccharomyces... [more]
RS25_CANGA1.281e-1145.4540S ribosomal protein S25 OS=Candida glabrata GN=R... [more]
RS25_ASHGO1.281e-1146.9740S ribosomal protein S25 OS=Ashbya gossypii GN=RP... [more]
RS25A_SCHPO2.853e-1150.7940S ribosomal protein S25-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02G14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832772 ID=CF832772; Name=CF832772; organism=Citrus sinensis; type=EST; length=534bp
TTTTTTTTGAATGTAAATAAAACTCTAAATTATACTTGTACACTCCCAAA
TAGATTCACAAGAAACAAAAATAATAGCAGTCAAAACACGGCAGAACGAA
ACTACATATAAACTAAGAAGCAAATATCAAAAGAGACTTAGGTGTTGGTT
GCCCTAGTGTAAATCTGCTGGCTTGCGTGAGCAGACACCATCCTGATCAA
ACCTCTAGCCATAAGCTCTCTTATTGCCTTCCTTGCAAGCGATCCATTAA
TCCTTACACGATCGGAGAGAATGGAAGGAGTGATAAGCTTGTATTTAGGA
GCCTCGGACAGAAGCTTGTCATAGGTTGCCTGATCAAACAACACCATGTT
GTTCACTTTCTCCTTTTGCTTTCCCTTGCTCCACTTCTTCTTCTTCTGCT
TGCCGCCTCCGGATTTCGCAGGCTTTGAGGATGGAGGGGGAGCCTTGTCC
TTCTTTGGAGCCATTGGATCTGATCAGACAGACAGAAGTGGAGAGCTCTG
AAACCAAAGTGAGATGTGGGAACAGAGGCGAGCC
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