CF832787

Overview
NameCF832787
Unique NameCF832787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3764 contig Csv1_Contig3764:525..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832787 vs. ExPASy Swiss-Prot
Match: LAC20_ORYSI (Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 46/158 (29.11%), Postives = 76/158 (48.10%), Query Frame = 1
Query:  262 INNVSLNLPPTP------YLGSIKYGLKDAFDQNGP-PENFSNEYDVMKPPVNA---NTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYG-WTALRFVADNPGAWAFHCHIE 702
            +NNVS   P T       Y G+ +    + F    P P N++N   +   P+      T   + +     NT+V++I Q++  +   +S+++P HLHG+D ++L +G G F  + +              ++ P G W A+RF+ DNPG W  HCH E
Sbjct:  390 MNNVSFTHPYTTALLERYYDGTPEGVYTEDFPVRPPRPYNYTNPALIPPGPLEEVLEPTFKATKLKRFKYNTSVEIIFQSSTLL---MSDSNPMHLHGYDVFLLAQGLGSFNAKRDIRKFNYHNPQLRNTILVPRGGWAAVRFITDNPGMWYLHCHFE 544          
BLAST of CF832787 vs. ExPASy Swiss-Prot
Match: LAC15_ORYSJ (Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC15 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  448 TVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF-TKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 702
            TVDV+ Q+   ++    +++P HLHGHD ++L +G G +    DE            T ++   GW A+RFVADNPGAW  HCH E
Sbjct:  487 TVDVVFQSTAMLQ---GDSNPMHLHGHDVFLLAQGIGIYDAARDEGKFNLVNPPRKNTVLVPNLGWAAVRFVADNPGAWLMHCHFE 569          
BLAST of CF832787 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSJ (Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC19 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 50/158 (31.65%), Postives = 74/158 (46.84%), Query Frame = 1
Query:  262 INNVSLNLPPTP------YLGSIKYGLKDAFDQNGP-PENFSNEYDVMKPPVNAN---TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 702
            +NNVS   P T       Y G+ K    + F    P P N++N   +   P+      T   + +     NT+V++I Q+   ++   S+++P HLHG+D ++L +G G F  K D             T  +   GW A+RFV DNPG W  HCH E
Sbjct:  395 MNNVSFAHPKTTALLERYYDGTSKGVYTEDFPIRPPRPFNYTNRDLIPPGPLEEALEPTFKATKLKRFKYNTSVEIIFQSTTLMQ---SDSNPMHLHGYDVFLLAQGLGNFNAKRDVRKFNYHNPQLRNTVQVPRGGWAAIRFVTDNPGMWYLHCHFE 549          
BLAST of CF832787 vs. ExPASy Swiss-Prot
Match: LAC19_ORYSI (Putative laccase-19 OS=Oryza sativa subsp. indica GN=LAC19 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 50/158 (31.65%), Postives = 74/158 (46.84%), Query Frame = 1
Query:  262 INNVSLNLPPTP------YLGSIKYGLKDAFDQNGP-PENFSNEYDVMKPPVNAN---TTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 702
            +NNVS   P T       Y G+ K    + F    P P N++N   +   P+      T   + +     NT+V++I Q+   ++   S+++P HLHG+D ++L +G G F  K D             T  +   GW A+RFV DNPG W  HCH E
Sbjct:  395 MNNVSFAHPKTTALLERYYDGTSKGVYTEDFPIRPPRPFNYTNRDLIPPGPLEEALEPTFKATKLKRFKYNTSVEIIFQSTTLMQ---SDSNPMHLHGYDVFLLAQGLGNFNAKRDVRKFNYHNPQLRNTVQVPRGGWAAIRFVTDNPGMWYLHCHFE 549          
BLAST of CF832787 vs. ExPASy Swiss-Prot
Match: LAC15_ARATH (Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 58/215 (26.98%), Postives = 90/215 (41.86%), Query Frame = 1
Query:  106 PITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNT------QNTINGFT----KWAINNVSLNLPP-TPYLGSIKYGLKDAFDQNGP--PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKF--TKEDEXXXXXXXXXXXXTAVIFPY-GWTALRFVADNPGAWAFHCHIE 702
            P  P ++D   +  F  KI  L     P     R +T ++       QN+  G        ++NN+S   P     L +  Y +K  +    P  P    N     +P       L + V ++     V++++Q  + +   L   HP HLHG  F+V+G G G +  ++ED               +  P  GW A+RFVADNPG W  HCH++
Sbjct:  318 PTLPFYNDTSAAFGFFTKIKCLFSGQVPVQISRRIITTVSINLRMCPQNSCEGPNGSRLAASMNNISFVTPSHVDILKAYYYHIKGVYGTRFPEFPPLIFNFTAENQPLFLETPRLATEVKVIEFGQVVELVIQGTSLVGGGLD--HPMHLHGFSFYVVGVGFGNYNISEEDPSSRYNLYDPPYKNTMTVPRNGWIAIRFVADNPGVWFMHCHLD 530          
BLAST of CF832787 vs. ExPASy Swiss-Prot
Match: LAC6_ARATH (Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 42/144 (29.17%), Postives = 64/144 (44.44%), Query Frame = 1
Query:  274 SLNLPPTPYLGSIKYGLKDAFD-QNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 702
            +L+ P TP         + A+D  NG P + +N+              G+   +    + + +I QN   +    +E HP HLHGH F+V+G G G + ++                V    GW A+RFVA+NPG W  HCH +
Sbjct:  415 TLDFPTTP---------EKAYDFVNGAPNDIANDTQAAN---------GTRAIVFEYGSRIQIIFQNTGTLT---TENHPIHLHGHSFYVIGYGTGNYDQQTAKFNLEDPPYLNTIGVPVG-GWAAIRFVANNPGLWLLHCHFD 536          
BLAST of CF832787 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSJ (Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC18 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 33/88 (37.50%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  442 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 702
            N +V+++ Q+   ++   S+++P HLHG+D +VL +G G F  K D             T  +   GW A+RF+ADNPG W  HCH E
Sbjct:  470 NASVEIVFQSTTLLQ---SDSNPMHLHGYDVFVLAQGLGNFDPKRDVEKFNYHNPQLRNTVQVPRGGWAAVRFLADNPGMWYLHCHFE 554          
BLAST of CF832787 vs. ExPASy Swiss-Prot
Match: FIO1_SCHPO (Iron transport multicopper oxidase fio1 OS=Schizosaccharomyces pombe GN=fio1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 37/97 (38.14%), Postives = 47/97 (48.45%), Query Frame = 1
Query:  418 SGVYMLGLNTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGK--FTKEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 702
            +  Y+      VDVI+ N +  +      HP+HLHGH F VL RGE       + E            T  I P  +  +RF+ADNPGAW  HCHIE
Sbjct:  394 TNAYIFEYGDVVDVIIDNHDTGK------HPFHLHGHTFQVLERGEENAGLYSDQESHTYYDNPMRRDTVEIEPGSFIVIRFIADNPGAWVIHCHIE 484          
BLAST of CF832787 vs. ExPASy Swiss-Prot
Match: LAC18_ORYSI (Putative laccase-18 OS=Oryza sativa subsp. indica GN=LAC18 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 1
Query:  442 NTTVDVILQNANAIRPNLSETHPWHLHGHDFWVLGRGEGKFT-KEDEXXXXXXXXXXXXTAVIFPYGWTALRFVADNPGAWAFHCHIE 702
            N +V+++ Q+   ++   S+++P HLHG+D +VL +G G F  K D             T  +   GW A+RF+ DNPG W  HCH E
Sbjct:  470 NASVEIVFQSTTLLQ---SDSNPMHLHGYDVFVLAQGLGNFDPKRDVEKFNYHNPQLRNTVQVPRGGWAAVRFLTDNPGMWYLHCHFE 554          
The following BLAST results are available for this feature:
BLAST of CF832787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
LAC20_ORYSI2.085e-1229.11Laccase-20 OS=Oryza sativa subsp. indica GN=LAC20 ... [more]
LAC15_ORYSJ2.085e-1240.70Laccase-15 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC19_ORYSJ2.724e-1231.65Laccase-19 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
LAC19_ORYSI2.724e-1231.65Putative laccase-19 OS=Oryza sativa subsp. indica ... [more]
LAC15_ARATH2.724e-1226.98Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV... [more]
LAC6_ARATH6.068e-1229.17Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2 SV=... [more]
LAC18_ORYSJ3.011e-1137.50Laccase-18 OS=Oryza sativa subsp. japonica GN=LAC1... [more]
FIO1_SCHPO3.933e-1138.14Iron transport multicopper oxidase fio1 OS=Schizos... [more]
LAC18_ORYSI8.761e-1136.36Putative laccase-18 OS=Oryza sativa subsp. indica ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02G23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832787 ID=CF832787; Name=CF832787; organism=Citrus sinensis; type=EST; length=718bp
TGGATCTCACCCGTTGTTAGGGGAAGAAAACCTGCAACCCCTCCGGCCCT
AACACTCTTAAACTATCATCCCACTTCTGCTTCCAAAATCCCTCTCTCCC
CACCACCTATAACTCCTAGATGGGACGACTATGATCACAGCAAATCATTC
TCCAACAAAATATTTGCCCTAATGGGATCCCCCAAGCCTCCCACAAATTT
CCACCGTCGGCTCACCCTTCTTAACACTCAAAACACCATTAACGGGTTCA
CTAAGTGGGCTATTAACAATGTGTCCCTGAATTTACCCCCCACTCCTTAC
TTAGGATCCATCAAATATGGTCTTAAAGATGCTTTTGATCAGAATGGTCC
CCCCGAAAACTTCTCGAATGAGTATGACGTGATGAAACCTCCTGTAAACG
CTAATACAACTCTTGGAAGTGGGGTTTACATGCTTGGTTTAAACACCACA
GTTGATGTTATACTTCAAAATGCAAACGCGATAAGGCCAAACTTGAGTGA
AACCCACCCTTGGCATTTGCATGGGCATGATTTTTGGGTATTAGGGCGCG
GAGAAGGGAAGTTTACGAAAGAAGATGAGAAGAAATTTAACTTGAAGAAT
CCACCATTGAAAAATACTGCGGTGATATTCCCATATGGCTGGACTGCTTT
AAGATTTGTTGCTGATAATCCAGGTGCTTGGGCATTTCACTGCCATATTG
AGCCCCCATTTCCATATT
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