CF832838

Overview
NameCF832838
Unique NameCF832838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 7.046e-32
Identity = 63/99 (63.64%), Postives = 79/99 (79.80%), Query Frame = 3
Query:  234 MAVYKVKLI-GPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MAVYKV+LI    G +   + PDD YI+D+AE+ G++LPYSCRAGACSTCAG++V G+VDQSD SFLDD Q+  G+VLTCVAYP+SDC + TH+E  LY
Sbjct:    1 MAVYKVRLICEEQGLDTTIECPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESLY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVK I P GE+ E +  DD Y++D+AE+AG++LPYSCRAG+CS+CAG++VSG VDQSD SFLDD Q+ +GFVLTC AYPTSD  I THKE EL
Sbjct:    1 ATYKVKFITPEGEQ-EVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER4_ARATH (Probable ferredoxin-4, chloroplastic OS=Arabidopsis thaliana GN=FD4 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 66/126 (52.38%), Postives = 89/126 (70.63%), Query Frame = 3
Query:  156 SPASLGSTRSVSKAFGLKCSSF---KASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            S A L +  + +  FGL  S     K  A    KVKLI P GEE E +  +D  I++SAE+AG+ELPYSCR+G C TC G++VSG VDQS GSFL+++Q++KG++LTC+A P  DCV+YTHK+S+L
Sbjct:   22 SQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 73/147 (49.66%), Postives = 91/147 (61.90%), Query Frame = 3
Query:   84 STVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            S VRLP S     AP   + S++ +   LG                +    A Y VKLI P+GE  E   PDD YI+D AE+ G++LPYSCRAG+CS+CAG++VSG +DQSD SFLDD Q+  G+VLTC AYP SD VI THKE +L
Sbjct:    8 SQVRLPMSLRVATAPAPARVSVLPASNKLGD---------------RLRMQATYNVKLITPDGEV-ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 73/147 (49.66%), Postives = 91/147 (61.90%), Query Frame = 3
Query:   84 STVRLPTSCLFQAAPRSKKFSLVKSPASLGSTRSVSKAFGLKCSSFKASAMAVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            S VRLP S     AP   + S++ +   LG                +    A Y VKLI P+GE  E   PDD YI+D AE+ G++LPYSCRAG+CS+CAG++VSG +DQSD SFLDD Q+  G+VLTC AYP SD VI THKE +L
Sbjct:    8 SQVRLPMSLRVATAPAPARVSVLPASNKLGD---------------RLRMQATYNVKLITPDGEV-ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 9.202e-32
Identity = 63/99 (63.64%), Postives = 81/99 (81.82%), Query Frame = 3
Query:  234 MAVYKVKLIGPN-GEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            M  YKVKL     G + E + P+D YI+D+AE+ G++LPYSCRAGACSTCAG+++SG+VDQSD SFLDD+Q+++GFVLTCVAYPTS+C I TH+E  LY
Sbjct:    1 MTSYKVKLTNEKEGIDVEINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEALY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.202e-31
Identity = 64/96 (66.67%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P+G   EF+ PDD YI+D AE+ G +LPYSCRAG+CS+CAG++ +GSVDQSDG+FLDD Q+  GFVLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFECPDDEYILDRAEEEGHDLPYSCRAGSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 62/94 (65.96%), Postives = 79/94 (84.04%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            +KVKL+ P+G + EF+ PDD YI+D AE+ G+ELPYSCRAG+CS+CAG++V G +DQSD SFLDD+Q+E+G+VLTC AYP SD VI THKE EL
Sbjct:    2 FKVKLLTPDGPK-EFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEEEL 94          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P+G   EF+ PDD YI+D AE+ G +LPYSCRAG+CS+CAG++ +G+VDQSDG++LDD QM  GFVLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 63/96 (65.62%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKVKL+ P+G   EF+ PDD YI+D AE+ G +LPYSCRAG+CS+CAG++ +G+VDQSDG++LDD QM  GFVLTCVAYP SD  I THKE EL
Sbjct:    1 ATYKVKLVTPDGPV-EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CF832838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_CYAPA7.046e-3263.64Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER_BRANA9.202e-3266.67Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER4_ARATH9.202e-3252.38Probable ferredoxin-4, chloroplastic OS=Arabidopsi... [more]
FER1_ORYSJ9.202e-3249.66Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI9.202e-3249.66Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_CYACA9.202e-3263.64Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_SOLAB1.202e-3166.67Ferredoxin OS=Solanum abutiloides PE=1 SV=1[more]
FER_LEUGL1.570e-3165.96Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]
FER_DATST1.570e-3165.63Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU1.570e-3165.63Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832838 ID=CF832838; Name=CF832838; organism=Citrus sinensis; type=EST; length=629bp
GTGGGGCGGCCAATCGTCGGTTTCACTATTACACTGTCACTCGTACAACC
GAACAACCTCCTGGGTTAAAAGGTATAAACATGTCAACTGTGAGACTTCC
CACATCTTGCTTATTCCAGGCTGCTCCCCGAAGCAAAAAATTTTCTTTGG
TCAAGAGCCCGGCTTCCCTGGGTTCGACCAGGAGTGTTTCTAAAGCATTT
GGACTGAAGTGTTCTTCATTCAAAGCATCTGCAATGGCCGTTTACAAAGT
GAAACTGATTGGACCAAACGGAGAGGAGAATGAGTTTGATGCCCCCGATG
ATGCTTACATCATAGACTCTGCCGAAGATGCCGGAATGGAGCTACCCTAC
TCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGG
CTCCGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGA
AAGGTTTCGTGCTTACATGCGTTGCATATCCTACATCAGATTGTGTGATT
TACACACACAAGGAATCTGAACTTTACTGAATAATAATGTTACGAGCTTG
GCATTTGCTTTCTGGGATCCGCATTTGTGCTAGAACGGTGGAAGAAACTG
TTGATATTTGCTTATGTTCATCTTTAGCA
back to top