CF832838

Overview
NameCF832838
Unique NameCF832838
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9601 contig Csv1_Contig9601:6..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.049e-30
Identity = 61/97 (62.89%), Postives = 74/97 (76.29%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            A Y VKLI P+GE    +  +D YI+D+AEDAG++LPYSCRAGACS+C G +  G+VDQSD SFLDD QM KGF LTC  YPTS+C I THKE +L+
Sbjct:    1 ATYSVKLINPDGEVT-IECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDLF 96          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.595e-30
Identity = 60/94 (63.83%), Postives = 76/94 (80.85%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            YKVKL+ P GE+ EF+ PDD YI+D+AE+ G++LPYSCRAG+CS+CAG++VSG VD SD SFL+D  M+ G+VLTC AY  SD VI THKE E+
Sbjct:    4 YKVKLLTPEGEK-EFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.125e-29
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 3
Query:  234 MAVYKVKLIGPNGEENE-FDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YKV LI    + N   D  DD +++D+AE+AG++LPYSCRAGACSTCAG++  G++DQS+ +FLDD QM  GFVLTC+AYP SDC I  H+E ELY
Sbjct:    1 MATYKVTLISEEHDINTTIDCNDDVFVLDAAEEAGIDLPYSCRAGACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDELY 99          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.125e-29
Identity = 59/98 (60.20%), Postives = 76/98 (77.55%), Query Frame = 3
Query:  237 AVYKVKLIGPN-GEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            A YK+ L+  + G +   + PDD YI+D+AE+ G++LPYSCRAGACSTCAG+++ G VDQSD SFLDD Q++ GFVLTCVAYPTS+  I TH+E  LY
Sbjct:    1 ASYKIHLVNKDQGIDETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEESLY 98          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.125e-29
Identity = 59/96 (61.46%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKV  + P+G +     P D Y++D+AED G++LPYSCRAGACS+CAG++ +GSV+Q DGSFLD++QME G+VLTCVAYPTSD  I THKE +L
Sbjct:    2 ASYKVTFVTPSGTKT-ITCPADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.469e-29
Identity = 61/95 (64.21%), Postives = 77/95 (81.05%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            Y V L  P+GE+    +PD +YI+D+AE+AG++LPYSCRAG+CS+CAG++ SG+VDQSD SFLDD QM+ GFVLTCVAY TSDC I TH+E  LY
Sbjct:    2 YMVTLKTPSGEQKVEVSPD-SYILDAAEEAGVDLPYSCRAGSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENLY 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.506e-29
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = 3
Query:  243 YKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            YKV L  P+G++   +   DAYI+D+AE+AG++LPYSCRAGACS+CAG++ +G++DQSD SFLDD Q  +GFVLTCVAY TSDC I TH+E  LY
Sbjct:    2 YKVTLKTPSGDQT-IEVSPDAYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESLY 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER1_PHYAM (Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.273e-29
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKV L+ P+G +   D PDD Y++D+AE+AG++LPYSCRAG+CS+C G++ +G+VDQ D SFLDD Q+E GFVLTCVA+P  D  I THKE ++
Sbjct:    1 ATYKVTLVTPSGTQT-IDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCTGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAFPKGDVTIETHKEEDI 95          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.583e-29
Identity = 57/96 (59.38%), Postives = 77/96 (80.21%), Query Frame = 3
Query:  237 AVYKVKLIGPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESEL 524
            A YKV  + P+G  N    P D Y++D+AE++G++LPYSCRAGACS+CAG++ +G+V+Q DGSFL+++QME G+VLTCVAYPTSD  I THKE +L
Sbjct:    2 ASYKVTFVTPSGT-NTITCPADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEEDL 96          
BLAST of CF832838 vs. ExPASy Swiss-Prot
Match: FER_PORYE (Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.291e-29
Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = 3
Query:  234 MAVYKVKLI-GPNGEENEFDAPDDAYIIDSAEDAGMELPYSCRAGACSTCAGQMVSGSVDQSDGSFLDDKQMEKGFVLTCVAYPTSDCVIYTHKESELY 527
            MA YK+ L+    G +  F+  +D YI+D+AE+ G+ELPYSCRAGACSTCAG++  G+VDQ+D SFLDD Q+  G+VLTC+AYP+SDC I TH E ELY
Sbjct:    1 MADYKIHLLCEEEGIDVTFNCAEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQADQSFLDDDQLLAGYVLTCIAYPSSDCTISTHVEQELY 99          
The following BLAST results are available for this feature:
BLAST of CF832838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_EUGVI5.049e-3062.89Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_PANGI6.595e-3063.83Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER_THAWE1.125e-2959.60Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]
FER3_CYACA1.125e-2960.20Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER2_PHYES1.125e-2961.46Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_DUNSA1.469e-2964.21Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER2_DUNSA2.506e-2962.11Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1[more]
FER1_PHYAM3.273e-2958.33Ferredoxin-1 OS=Phytolacca americana PE=1 SV=1[more]
FER2_PHYAM5.583e-2959.38Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER_PORYE7.291e-2959.60Ferredoxin OS=Porphyra yezoensis GN=petF PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832838 ID=CF832838; Name=CF832838; organism=Citrus sinensis; type=EST; length=629bp
GTGGGGCGGCCAATCGTCGGTTTCACTATTACACTGTCACTCGTACAACC
GAACAACCTCCTGGGTTAAAAGGTATAAACATGTCAACTGTGAGACTTCC
CACATCTTGCTTATTCCAGGCTGCTCCCCGAAGCAAAAAATTTTCTTTGG
TCAAGAGCCCGGCTTCCCTGGGTTCGACCAGGAGTGTTTCTAAAGCATTT
GGACTGAAGTGTTCTTCATTCAAAGCATCTGCAATGGCCGTTTACAAAGT
GAAACTGATTGGACCAAACGGAGAGGAGAATGAGTTTGATGCCCCCGATG
ATGCTTACATCATAGACTCTGCCGAAGATGCCGGAATGGAGCTACCCTAC
TCATGTCGGGCTGGTGCCTGCTCTACTTGTGCTGGGCAGATGGTTTCAGG
CTCCGTTGACCAATCAGATGGATCATTCCTTGATGATAAGCAGATGGAGA
AAGGTTTCGTGCTTACATGCGTTGCATATCCTACATCAGATTGTGTGATT
TACACACACAAGGAATCTGAACTTTACTGAATAATAATGTTACGAGCTTG
GCATTTGCTTTCTGGGATCCGCATTTGTGCTAGAACGGTGGAAGAAACTG
TTGATATTTGCTTATGTTCATCTTTAGCA
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