CF832853

Overview
NameCF832853
Unique NameCF832853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECOK1 (Carnitine operon protein caiE OS=Escherichia coli O1:K1 / APEC GN=caiE PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECOHS (Carnitine operon protein caiE OS=Escherichia coli O9:H4 (strain HS) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECO8A (Carnitine operon protein caiE OS=Escherichia coli O8 (strain IAI1) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECO81 (Carnitine operon protein caiE OS=Escherichia coli O81 (strain ED1a) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECO55 (Carnitine operon protein caiE OS=Escherichia coli (strain 55989 / EAEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECO45 (Carnitine operon protein caiE OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECO27 (Carnitine operon protein caiE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECO24 (Carnitine operon protein caiE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLI (Carnitine operon protein caiE OS=Escherichia coli (strain K12) GN=caiE PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLC (Carnitine operon protein caiE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PIVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
The following BLAST results are available for this feature:
BLAST of CF832853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_ECOK16.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOHS6.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO8A6.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO816.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO556.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO456.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO276.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO246.241e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOLI8.151e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOLC8.151e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832853 ID=CF832853; Name=CF832853; organism=Citrus sinensis; type=EST; length=609bp
AACTTGAGCTCCAAAAGTATCGACGCTCATTCACCGATCCCCAAAGCCAA
CAAGAGATGGGAACCCTAGGGCGAGCACTTTACACCGTTGGCTTCTGGAT
TCACGAAACCGGCCAGGCCCTTGATCGCCTCGGCTGCCGTCTCCAAGGCA
ACTACTACTTCCAAAAGCAACTGTCTAGGCATCCAACTCTCATGAACATA
TTTGATAAAGCTCCCGCAGTCGACAAAGATGCATTTGTTGCTCCAAGTGC
CTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTTGGTATG
GATGTGTTTTGAGAGGGGATGTGAATAGCATCACTGTTGGATCAGGAACA
AATATACATGACAACTCCCTTGTGCATGTTGCCAAGTCTAATCTAAGAGG
GAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTACGCCATATTG
CTGTTTTACATGGCTGTACTGATGAGGACGAGGCCTTTGTTGGCATGGGA
GCAACACTACTTGATGGTGTTGCTGCTGATAGACATGGCATGGTTGCTGC
TGGATCTCTTGTGAGGCACAGTACCGCCATCCCTTCTGGATAGGTATGGG
GAGGCAATC
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