CF832853

Overview
NameCF832853
Unique NameCF832853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECODH (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / DH10B) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECOBW (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / BW2952) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_ECO7I (Carnitine operon protein caiE OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 46/118 (38.98%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   AFV PSA +IGDV VG G  I     LRGD   + V +G NI D  ++H            T +G+N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDT------DTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAISFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_SALTY (Carnitine operon protein caiE OS=Salmonella typhimurium GN=caiE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+ D  ++H            T + +N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_SALTI (Carnitine operon protein caiE OS=Salmonella typhi GN=caiE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+ D  ++H            T + +N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_SALSV (Carnitine operon protein caiE OS=Salmonella schwarzengrund (strain CVM19633) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+ D  ++H            T + +N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_SALPK (Carnitine operon protein caiE OS=Salmonella paratyphi A (strain AKU_12601) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+ D  ++H            T + +N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_SALPC (Carnitine operon protein caiE OS=Salmonella paratyphi C (strain RKS4594) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+ D  ++H            T + +N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_SALPA (Carnitine operon protein caiE OS=Salmonella paratyphi A GN=caiE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+ D  ++H            T + +N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
[Close]
BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_SALNS (Carnitine operon protein caiE OS=Salmonella newport (strain SL254) GN=caiE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+ D  ++H            T + +N  + H A+LHGC    +A VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVK 122
The following BLAST results are available for this feature:
BLAST of CF832853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_ECODH8.151e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOBW8.151e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO7I8.151e-1438.98Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SALTY2.372e-1337.29Carnitine operon protein caiE OS=Salmonella typhim... [more]
CAIE_SALTI2.372e-1337.29Carnitine operon protein caiE OS=Salmonella typhi ... [more]
CAIE_SALSV2.372e-1337.29Carnitine operon protein caiE OS=Salmonella schwar... [more]
CAIE_SALPK2.372e-1337.29Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_SALPC2.372e-1337.29Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_SALPA2.372e-1337.29Carnitine operon protein caiE OS=Salmonella paraty... [more]
CAIE_SALNS2.372e-1337.29Carnitine operon protein caiE OS=Salmonella newpor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832853 ID=CF832853; Name=CF832853; organism=Citrus sinensis; type=EST; length=609bp
AACTTGAGCTCCAAAAGTATCGACGCTCATTCACCGATCCCCAAAGCCAA
CAAGAGATGGGAACCCTAGGGCGAGCACTTTACACCGTTGGCTTCTGGAT
TCACGAAACCGGCCAGGCCCTTGATCGCCTCGGCTGCCGTCTCCAAGGCA
ACTACTACTTCCAAAAGCAACTGTCTAGGCATCCAACTCTCATGAACATA
TTTGATAAAGCTCCCGCAGTCGACAAAGATGCATTTGTTGCTCCAAGTGC
CTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTTGGTATG
GATGTGTTTTGAGAGGGGATGTGAATAGCATCACTGTTGGATCAGGAACA
AATATACATGACAACTCCCTTGTGCATGTTGCCAAGTCTAATCTAAGAGG
GAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTACGCCATATTG
CTGTTTTACATGGCTGTACTGATGAGGACGAGGCCTTTGTTGGCATGGGA
GCAACACTACTTGATGGTGTTGCTGCTGATAGACATGGCATGGTTGCTGC
TGGATCTCTTGTGAGGCACAGTACCGCCATCCCTTCTGGATAGGTATGGG
GAGGCAATC
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