CF832853

Overview
NameCF832853
Unique NameCF832853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF832853 vs. ExPASy Swiss-Prot
Match: CAIE_PROSL (Carnitine operon protein caiE OS=Proteus sp. (strain LE138) GN=caiE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 39/118 (33.05%), Postives = 60/118 (50.85%), Query Frame = 3 
Query:  213 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSITVGSGTNIHDNSLVHVAKSNLRGKVLPTTIGDNVTVRHIAVLHGCTDEDEAFVGMGATLLDGVAADRHGMVAAGSLVR 566
            P V   A++ PSA +IGDV +G G  I     LRGD   + V +G N+ D  ++H          + T + +N  + H A+LH C    ++ VGM + ++DG       +VAA S V+
Sbjct:   11 PVVHPTAYIHPSAVLIGDVIIGAGVYIGPLASLRGDYGRLIVEAGANLQDGCVMHGYTD------MDTIVQENGHIGHGAILHSCIIGRDSLVGMNSVIMDGAIIGEESIVAAMSFVK 122
The following BLAST results are available for this feature:
BLAST of CF832853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
CAIE_PROSL2.899e-1133.05Carnitine operon protein caiE OS=Proteus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832853 ID=CF832853; Name=CF832853; organism=Citrus sinensis; type=EST; length=609bp
AACTTGAGCTCCAAAAGTATCGACGCTCATTCACCGATCCCCAAAGCCAA
CAAGAGATGGGAACCCTAGGGCGAGCACTTTACACCGTTGGCTTCTGGAT
TCACGAAACCGGCCAGGCCCTTGATCGCCTCGGCTGCCGTCTCCAAGGCA
ACTACTACTTCCAAAAGCAACTGTCTAGGCATCCAACTCTCATGAACATA
TTTGATAAAGCTCCCGCAGTCGACAAAGATGCATTTGTTGCTCCAAGTGC
CTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCATCTATTTGGTATG
GATGTGTTTTGAGAGGGGATGTGAATAGCATCACTGTTGGATCAGGAACA
AATATACATGACAACTCCCTTGTGCATGTTGCCAAGTCTAATCTAAGAGG
GAAGGTGCTACCGACTACTATTGGGGACAATGTTACTGTACGCCATATTG
CTGTTTTACATGGCTGTACTGATGAGGACGAGGCCTTTGTTGGCATGGGA
GCAACACTACTTGATGGTGTTGCTGCTGATAGACATGGCATGGTTGCTGC
TGGATCTCTTGTGAGGCACAGTACCGCCATCCCTTCTGGATAGGTATGGG
GAGGCAATC
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