CF832856

Overview
NameCF832856
Unique NameCF832856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1097 contig Csv1_Contig1097:453..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_SALCH (Carnitine operon protein caiE OS=Salmonella choleraesuis GN=caiE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 33/92 (35.87%), Postives = 57/92 (61.96%), Query Frame = -3 
Query:  450 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 725
            T + +N  +GH A+LHGC V  +A VGM + ++DG V+    +VAA S V+   +  + ++  G+PA+ LR++TD+E+ +   +   Y +LA
Sbjct:   72 TIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQDLA 163
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECOUT (Carnitine operon protein caiE OS=Escherichia coli (strain UTI89 / UPEC) GN=caiE PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = -3 
Query:  435 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HAA
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLU (Carnitine operon protein caiE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 34/110 (30.91%), Postives = 61/110 (55.45%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL6 (Carnitine operon protein caiE OS=Escherichia coli O6 GN=caiE PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = -3 
Query:  435 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HAA
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECOL5 (Carnitine operon protein caiE OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = -3 
Query:  435 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HAA
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECOK1 (Carnitine operon protein caiE OS=Escherichia coli O1:K1 / APEC GN=caiE PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = -3 
Query:  435 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HAA
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECO81 (Carnitine operon protein caiE OS=Escherichia coli O81 (strain ED1a) GN=caiE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 34/110 (30.91%), Postives = 61/110 (55.45%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECO45 (Carnitine operon protein caiE OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 34/98 (34.69%), Postives = 58/98 (59.18%), Query Frame = -3 
Query:  435 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HAA
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAA 169
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECO27 (Carnitine operon protein caiE OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 34/110 (30.91%), Postives = 61/110 (55.45%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECO7I (Carnitine operon protein caiE OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 34/110 (30.91%), Postives = 61/110 (55.45%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAISFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
The following BLAST results are available for this feature:
BLAST of CF832856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CAIE_SALCH1.076e-1135.87Carnitine operon protein caiE OS=Salmonella choler... [more]
CAIE_ECOUT1.076e-1134.69Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOLU1.076e-1130.91Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOL61.076e-1134.69Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOL51.076e-1134.69Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOK11.076e-1134.69Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO811.076e-1130.91Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO451.076e-1134.69Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO271.076e-1130.91Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO7I1.406e-1130.91Carnitine operon protein caiE OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832856 ID=CF832856; Name=CF832856; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTTTTTCGATAAAAACCAACATACATGATGCTGGTGGCATTAGTTT
CGGGCAGAGAAGAAAATAGAGTTCTTAAACAGTCACAAGAAGGGCGGAGC
TGAAAGCTAAAAAGGAGCCACTAAAAAGGAGCCACGAATCTATTCTACAT
GTCTGGTATTATTGGGAACAAGGATGACCCCCTTCTTCATGTATTTGCAC
GTAACAACAAATATTCCTTGATTTCAAATCTCCAGATTCAAACTCAGAAA
AAACTACCTAGGAAAAATATTATTTCTGCAACGACTTTGGATCTTTGATG
CTATCAGGAACAATAATTTCTTGAGGAGTTTCACGAACAACACCGAGCAT
TGAGTCGTATTCCTCATCCCGACGTGCAAACTTCTTGCGAAGAACTTTCT
CAAATTCAATCTCATCGAAGGACTTCGCATTCTCAGCTGCATGAACTTGT
GCCAAGTTGGAATAATTGGTGGCTGACTGGGAAATAAAGGCTATTTCTTC
ATCAGTGAGCTTTCTCAGGAACTTTGCTGGATTGCCTCCCCATACCTCTC
CAGAAGGGATCCTGGTATTCTGCCTCACAAGAGATCCAGCAGCAACCATG
CCATGTCTCTCAACAACAACACCATCAAGTAGTGTTGCTCCCATGCCAAC
AAAGGCCTCGTCCTCAACAGTACAGCCATGTAAAACAGCACTATGGCCTA
CAGTAACATTGTCCCCAATAGTAGTCGGTAGCACCT
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