CF832856

Overview
NameCF832856
Unique NameCF832856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1097 contig Csv1_Contig1097:453..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_SALA4 (Carnitine operon protein caiE OS=Salmonella agona (strain SL483) GN=caiE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 32/92 (34.78%), Postives = 57/92 (61.96%), Query Frame = -3 
Query:  450 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 725
            T + +N  +GH A+LHGC V  +A VGM + ++DG ++    +VAA S V+   +  + ++  G+PA+ LR++TD+E+ +   +   Y +LA
Sbjct:   72 TIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAMIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKRLNTKEYQDLA 163
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECOSM (Carnitine operon protein caiE OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 33/98 (33.67%), Postives = 58/98 (59.18%), Query Frame = -3 
Query:  435 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-AQVHAA 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L  + HA+
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHAS 169
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_SHISS (Carnitine operon protein caiE OS=Shigella sonnei (strain Ss046) GN=caiE PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_SHIDS (Carnitine operon protein caiE OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiE PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLI (Carnitine operon protein caiE OS=Escherichia coli (strain K12) GN=caiE PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = -3 
Query:  453 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L
Sbjct:   72 TIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDL 162
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECOHS (Carnitine operon protein caiE OS=Escherichia coli O9:H4 (strain HS) GN=caiE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECODH (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / DH10B) GN=caiE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = -3 
Query:  453 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L
Sbjct:   72 TIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDL 162
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECOBW (Carnitine operon protein caiE OS=Escherichia coli (strain K12 / BW2952) GN=caiE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = -3 
Query:  453 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+   R    ++  G PA+ +R ++D+E+ +   +   Y +L
Sbjct:   72 TIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDL 162
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECO8A (Carnitine operon protein caiE OS=Escherichia coli O8 (strain IAI1) GN=caiE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECO5E (Carnitine operon protein caiE OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
The following BLAST results are available for this feature:
BLAST of CF832856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CAIE_SALA42.398e-1134.78Carnitine operon protein caiE OS=Salmonella agona ... [more]
CAIE_ECOSM2.398e-1133.67Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SHISS4.090e-1130.00Carnitine operon protein caiE OS=Shigella sonnei (... [more]
CAIE_SHIDS4.090e-1130.00Carnitine operon protein caiE OS=Shigella dysenter... [more]
CAIE_ECOLI4.090e-1134.07Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOHS4.090e-1130.00Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECODH4.090e-1134.07Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECOBW4.090e-1134.07Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO8A4.090e-1130.00Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO5E4.090e-1130.00Carnitine operon protein caiE OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02I24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832856 ID=CF832856; Name=CF832856; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTTTTTCGATAAAAACCAACATACATGATGCTGGTGGCATTAGTTT
CGGGCAGAGAAGAAAATAGAGTTCTTAAACAGTCACAAGAAGGGCGGAGC
TGAAAGCTAAAAAGGAGCCACTAAAAAGGAGCCACGAATCTATTCTACAT
GTCTGGTATTATTGGGAACAAGGATGACCCCCTTCTTCATGTATTTGCAC
GTAACAACAAATATTCCTTGATTTCAAATCTCCAGATTCAAACTCAGAAA
AAACTACCTAGGAAAAATATTATTTCTGCAACGACTTTGGATCTTTGATG
CTATCAGGAACAATAATTTCTTGAGGAGTTTCACGAACAACACCGAGCAT
TGAGTCGTATTCCTCATCCCGACGTGCAAACTTCTTGCGAAGAACTTTCT
CAAATTCAATCTCATCGAAGGACTTCGCATTCTCAGCTGCATGAACTTGT
GCCAAGTTGGAATAATTGGTGGCTGACTGGGAAATAAAGGCTATTTCTTC
ATCAGTGAGCTTTCTCAGGAACTTTGCTGGATTGCCTCCCCATACCTCTC
CAGAAGGGATCCTGGTATTCTGCCTCACAAGAGATCCAGCAGCAACCATG
CCATGTCTCTCAACAACAACACCATCAAGTAGTGTTGCTCCCATGCCAAC
AAAGGCCTCGTCCTCAACAGTACAGCCATGTAAAACAGCACTATGGCCTA
CAGTAACATTGTCCCCAATAGTAGTCGGTAGCACCT
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