CF832856

Overview
NameCF832856
Unique NameCF832856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECO57 (Carnitine operon protein caiE OS=Escherichia coli O157:H7 GN=caiE PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECO55 (Carnitine operon protein caiE OS=Escherichia coli (strain 55989 / EAEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECO24 (Carnitine operon protein caiE OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=caiE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_SHIFL (Carnitine operon protein caiE OS=Shigella flexneri GN=caiE PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_SHIF8 (Carnitine operon protein caiE OS=Shigella flexneri serotype 5b (strain 8401) GN=caiE PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-11
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
[Close]
BLAST of CF832856 vs. ExPASy Swiss-Prot
Match: CAIE_ECOLC (Carnitine operon protein caiE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-11
Identity = 33/110 (30.00%), Postives = 60/110 (54.55%), Query Frame = -3 
Query:  411 TTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNL-----AQVHAAENAKSFDE 725
            T +G+N  +GH A+LHGC +  +A VGM + ++DG V+    +VAA S V+        ++  G PA+ +R ++D+E+ +   +   Y +L     A +H  +  +  +E
Sbjct:   72 TIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLIGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEE 181
The following BLAST results are available for this feature:
BLAST of CF832856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CAIE_ECO574.090e-1130.00Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO554.090e-1130.00Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_ECO244.090e-1130.00Carnitine operon protein caiE OS=Escherichia coli ... [more]
CAIE_SHIFL5.342e-1130.00Carnitine operon protein caiE OS=Shigella flexneri... [more]
CAIE_SHIF85.342e-1130.00Carnitine operon protein caiE OS=Shigella flexneri... [more]
CAIE_ECOLC6.977e-1130.00Carnitine operon protein caiE OS=Escherichia coli ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02I24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832856 ID=CF832856; Name=CF832856; organism=Citrus sinensis; type=EST; length=736bp
TTTTTTTTTTCGATAAAAACCAACATACATGATGCTGGTGGCATTAGTTT
CGGGCAGAGAAGAAAATAGAGTTCTTAAACAGTCACAAGAAGGGCGGAGC
TGAAAGCTAAAAAGGAGCCACTAAAAAGGAGCCACGAATCTATTCTACAT
GTCTGGTATTATTGGGAACAAGGATGACCCCCTTCTTCATGTATTTGCAC
GTAACAACAAATATTCCTTGATTTCAAATCTCCAGATTCAAACTCAGAAA
AAACTACCTAGGAAAAATATTATTTCTGCAACGACTTTGGATCTTTGATG
CTATCAGGAACAATAATTTCTTGAGGAGTTTCACGAACAACACCGAGCAT
TGAGTCGTATTCCTCATCCCGACGTGCAAACTTCTTGCGAAGAACTTTCT
CAAATTCAATCTCATCGAAGGACTTCGCATTCTCAGCTGCATGAACTTGT
GCCAAGTTGGAATAATTGGTGGCTGACTGGGAAATAAAGGCTATTTCTTC
ATCAGTGAGCTTTCTCAGGAACTTTGCTGGATTGCCTCCCCATACCTCTC
CAGAAGGGATCCTGGTATTCTGCCTCACAAGAGATCCAGCAGCAACCATG
CCATGTCTCTCAACAACAACACCATCAAGTAGTGTTGCTCCCATGCCAAC
AAAGGCCTCGTCCTCAACAGTACAGCCATGTAAAACAGCACTATGGCCTA
CAGTAACATTGTCCCCAATAGTAGTCGGTAGCACCT
back to top