CF832859

Overview
NameCF832859
Unique NameCF832859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1040..1420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_VIBPA (Biosynthetic arginine decarboxylase OS=Vibrio parahaemolyticus GN=speA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.988e-16
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG 295
            + V  S+F S+PD W I  +FP++P+  L +    R V+ D+TCDSDG ID ++ G    ++LP+         +  PY +G FL GAY+E LG +HNLFG
Sbjct:  468 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLGDAEERRAVMLDITCDSDGAIDHYVDGQGIESTLPV-----PAWSKDKPYLMGFFLVGAYQEILGDMHNLFG 563
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_AERHH (Biosynthetic arginine decarboxylase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=speA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.334e-15
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 2 
Query:   17 SIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 328
            S+F S+PD W I  +FP++P+  L+     RG+L D+TCDSDG+++ ++ G    ++LP+        GE    ++G FL GAY+E LG +HNLFG      V   D
Sbjct:  465 SLFQSLPDAWGIGQVFPVMPLAGLERPLTRRGILMDITCDSDGQVEHYVDGLGVESTLPMPVY-----GEHEECHVGFFLVGAYQEILGDLHNLFGDTHCAEVWLDD 566
The following BLAST results are available for this feature:
BLAST of CF832859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SPEA_VIBPA5.988e-1641.58Biosynthetic arginine decarboxylase OS=Vibrio para... [more]
SPEA_AERHH1.334e-1539.25Biosynthetic arginine decarboxylase OS=Aeromonas h... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832859 ID=CF832859; Name=CF832859; organism=Citrus sinensis; type=EST; length=381bp
TTATCATGTGACTCTATCTATTTTCACTTCAATTCCGGATTATTGGGCCA
TTGCGTAGTTGTTTCCTATTGTTCCAATTCATCATTTGGATGAGAGGCCT
GGAGTGAGGGGGGTTTTATCGGATTTGACTTGTGATAGTGATGGTAAGAT
TGATAAGTTCATTGGTGGTGGTACGAGCTTGCCGTTACATGAAATGGTTG
GTGGTGGTTGTGGTGAGCGTGGGCCTTATTATTTGGGGATGTTCTTGGGC
GGGGCTTATGAGGAGGCCCTCGGTGGAGTCCACAACTTGTTTGGTGGTCC
AAGCGTGGTACGCGTCTTGCAGAGTGATGGTCCGCACAGCTTTGCTGTGA
CTCAGGCCATGCCTGGGCCGTCTTGTGGGGA
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