CF832859

Overview
NameCF832859
Unique NameCF832859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1040..1420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_BACV8 (Biosynthetic arginine decarboxylase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=speA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.472e-22
Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTQAMPG 367
            Y    S+F S+PD WAI  +FPI+PI  LDE+P     L D+TCDSDGKI  FI        LP+H + G     +  YY+G+FL GAY+E LG +HNLFG  + V V   D    +++ Q + G
Sbjct:  456 YFCNFSLFQSLPDSWAIDQIFPIMPIQRLDEKPDRNATLQDITCDSDGKIANFISTRYVSHDLPVHSLKG-----KDAYYIGVFLVGAYQEILGDMHNLFGDTNAVHVTVDD--KGYSIDQVIDG 573          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_PSEPK (Biosynthetic arginine decarboxylase OS=Pseudomonas putida (strain KT2440) GN=speA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.278e-22
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQS 325
            Y    S+F S+PD WAI  + PI+P+H LDE P  R VL DLTCDSDGKI++++      TS+P+H +  G       Y LG+FL GAY+E LG +HNLFG    V + Q+
Sbjct:  465 YICNFSVFQSLPDTWAIGQVLPIIPLHRLDEEPMRRAVLQDLTCDSDGKINQYVDEQSIETSMPVHAVKEG-----EDYLLGVFLVGAYQEILGDMHNLFGDTDSVNIYQN 570          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_PROMS (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain AS9601) GN=speA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.278e-22
Identity = 55/108 (50.93%), Postives = 70/108 (64.81%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            Y+  LSIF SIPD WAI  +FPIVPIH   E P  +G  +DLTCDSDGK++ FI  G   + L LH+       E   Y +G+F+ GAY+EALG +HNLFG  +VV +
Sbjct:  472 YYANLSIFKSIPDSWAINQIFPIVPIHRHLEEPFCKGNFADLTCDSDGKLNNFIDNGKIKSLLNLHKP-----EEDKDYLIGIFMTGAYQEALGNLHNLFGSTNVVHI 574          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_PSESM (Biosynthetic arginine decarboxylase OS=Pseudomonas syringae pv. tomato GN=speA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.281e-22
Identity = 53/111 (47.75%), Postives = 69/111 (62.16%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQS 325
            Y    S+F S+PD WAI  + PI+P+H LDE P  R VL DLTCDSDGKI +++      TS+P+H +      E   Y LG+FL GAY+E LG +HNLFG    V + Q+
Sbjct:  465 YICNFSVFQSLPDTWAIGQVLPILPLHRLDEEPVRRAVLQDLTCDSDGKIKQYVDEQSIETSMPVHSL-----NEGEDYLLGIFLVGAYQEILGDMHNLFGDTDSVNIYQN 570          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_PROM9 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9312) GN=speA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.281e-22
Identity = 55/108 (50.93%), Postives = 70/108 (64.81%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            Y+  LSIF SIPD WAI  +FPIVPIH   E P  +G  +DLTCDSDGK++ FI  G   + L LH+       E   Y +G+F+ GAY+EALG +HNLFG  +VV +
Sbjct:  472 YYANLSIFKSIPDSWAINQIFPIVPIHRHLEEPFCKGNFADLTCDSDGKLNNFIDDGKIKSLLNLHKP-----EEDKDYLIGIFMTGAYQEALGNLHNLFGSTNVVHI 574          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_PROM5 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9515) GN=speA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.281e-22
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            Y+  LS+F SIPD WAI  +FPI+PIH   E P  +G  +DLTCDSDGK++ FI  G   + L LH        E   Y +G+F+ GAY+EALG  HNLFG  +V+ +
Sbjct:  472 YYANLSVFKSIPDTWAINQIFPIIPIHRHLEEPICKGNFADLTCDSDGKLNNFIDNGKIKSLLNLHRP-----EENNDYLIGIFMAGAYQEALGNFHNLFGNTNVIHI 574          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_PROM2 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9215) GN=speA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.281e-22
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            Y+  LSIF SIPD WAI  +FPI+PIH   E P  +G  +DLTCDSDGK++ FI  G   + L LHE       +   Y +G+F+ GAY+EALG +HNLFG  +VV +
Sbjct:  472 YYANLSIFKSIPDCWAINQIFPIMPIHRHLEEPFCKGNFADLTCDSDGKLNSFINNGKIKSLLNLHEP-----EQDKDYLIGIFMTGAYQEALGNLHNLFGNTNVVHI 574          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_PROM0 (Biosynthetic arginine decarboxylase OS=Prochlorococcus marinus (strain MIT 9301) GN=speA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.281e-22
Identity = 55/108 (50.93%), Postives = 70/108 (64.81%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            Y+  LSIF SIPD WAI  +FPIVPIH   E P  +G  +DLTCDSDGK++ FI  G   + L LHE       +   Y +G+F+ GAY+EALG +HNLFG  +VV +
Sbjct:  472 YYANLSIFKSIPDSWAINQIFPIVPIHRHLEEPFCKGNFADLTCDSDGKLNNFIDDGKIKSLLNLHEP-----EKDKDYLIGIFMTGAYQEALGNLHNLFGSTNVVHI 574          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_XANAC (Biosynthetic arginine decarboxylase OS=Xanthomonas axonopodis pv. citri GN=speA PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.592e-22
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVL 319
            Y V  S+F SIPD WAI  +FPIVPI  L+E P  RG+++D+TCDSDG +  ++      +SLPLH +  G       Y +G FL GAY+E LG +HNLFG    V V+
Sbjct:  453 YFVNFSVFESIPDVWAIDQVFPIVPIERLNEAPQRRGIIADMTCDSDGMVKTYVENESLDSSLPLHRLNAG-----ESYRIGFFLVGAYQEILGDIHNLFGDTDAVEVV 556          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_PSEAE (Biosynthetic arginine decarboxylase OS=Pseudomonas aeruginosa GN=speA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.592e-22
Identity = 56/114 (49.12%), Postives = 71/114 (62.28%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQ-SDG 331
            Y    S+F S+PD WAI  + PI+P+H L E P  R VL DLTCDSDGKI +++      TSLP+HE+  G       Y +G+FL GAY+E LG +HNLFG    V V Q +DG
Sbjct:  465 YICNFSVFQSLPDTWAIGQVLPILPLHRLGEEPDRRAVLQDLTCDSDGKITQYVDEQSIETSLPVHEVKEG-----EDYLIGVFLVGAYQEILGDMHNLFGDTDSVNVYQRADG 573          
The following BLAST results are available for this feature:
BLAST of CF832859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SPEA_BACV81.472e-2244.00Biosynthetic arginine decarboxylase OS=Bacteroides... [more]
SPEA_PSEPK3.278e-2247.75Biosynthetic arginine decarboxylase OS=Pseudomonas... [more]
SPEA_PROMS3.278e-2250.93Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_PSESM4.281e-2247.75Biosynthetic arginine decarboxylase OS=Pseudomonas... [more]
SPEA_PROM94.281e-2250.93Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_PROM54.281e-2248.15Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_PROM24.281e-2250.00Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_PROM04.281e-2250.93Biosynthetic arginine decarboxylase OS=Prochloroco... [more]
SPEA_XANAC5.592e-2247.71Biosynthetic arginine decarboxylase OS=Xanthomonas... [more]
SPEA_PSEAE5.592e-2249.12Biosynthetic arginine decarboxylase OS=Pseudomonas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832859 ID=CF832859; Name=CF832859; organism=Citrus sinensis; type=EST; length=381bp
TTATCATGTGACTCTATCTATTTTCACTTCAATTCCGGATTATTGGGCCA
TTGCGTAGTTGTTTCCTATTGTTCCAATTCATCATTTGGATGAGAGGCCT
GGAGTGAGGGGGGTTTTATCGGATTTGACTTGTGATAGTGATGGTAAGAT
TGATAAGTTCATTGGTGGTGGTACGAGCTTGCCGTTACATGAAATGGTTG
GTGGTGGTTGTGGTGAGCGTGGGCCTTATTATTTGGGGATGTTCTTGGGC
GGGGCTTATGAGGAGGCCCTCGGTGGAGTCCACAACTTGTTTGGTGGTCC
AAGCGTGGTACGCGTCTTGCAGAGTGATGGTCCGCACAGCTTTGCTGTGA
CTCAGGCCATGCCTGGGCCGTCTTGTGGGGA
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