CF832859

Overview
NameCF832859
Unique NameCF832859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1040..1420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_TOLAT (Biosynthetic arginine decarboxylase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=speA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.431e-19
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 2
Query:    8 VTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 328
            V  S+F S+PD W I  +FPI+P+  LD++P  RGV+ D+TCDSDG I +++ G     SLP+ EM           Y+G FL GAY+E LG +HNLFG      V  +D
Sbjct:  464 VNFSLFQSLPDAWGIDQIFPIMPLSGLDQQPTRRGVIMDITCDSDGMIKEYVDGVGIENSLPMPEMRNDETN-----YMGFFLVGAYQEILGDLHNLFGDTHSAEVCLND 568          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SHEWM (Biosynthetic arginine decarboxylase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=speA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.431e-19
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGP-SVVRVLQSDG 331
            + V  S+F S+PD W I  +FPI+P+  LD+ P  R V+ D+TCDSDG ID+++ G    T+LP+            PY +G FL GAY+E LG +HNLFG   S V  L  DG
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPIMPLSGLDKAPERRAVMLDITCDSDGTIDQYVDGQGIETTLPV-----PAWSAESPYLIGFFLVGAYQEILGDMHNLFGDTNSAVIRLDDDG 572          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SHEHH (Biosynthetic arginine decarboxylase OS=Shewanella halifaxensis (strain HAW-EB4) GN=speA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.431e-19
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG--GPSVVRV 316
            + V  S+F S+PD W I  +FP++P+  LD+ P  R V+ D+TCDSDG ID+++ G    T+LP+         +  PY +G FL GAY+E LG +HNLFG    +VVR+
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPESRAVMLDITCDSDGTIDQYVDGQGIETTLPVPAWT-----QESPYLIGFFLVGAYQEILGDMHNLFGDTNSAVVRL 568          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SHIFL (Biosynthetic arginine decarboxylase OS=Shigella flexneri GN=speA PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 587          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SHIF8 (Biosynthetic arginine decarboxylase OS=Shigella flexneri serotype 5b (strain 8401) GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SHEPW (Biosynthetic arginine decarboxylase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG--GPSVVRV 316
            + V  S+F S+PD W I  +FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+         +  PY +G FL GAY+E LG +HNLFG    +VVRV
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPVPAWT-----QESPYLIGFFLVGAYQEILGDMHNLFGDTNSAVVRV 568          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SALTY (Biosynthetic arginine decarboxylase OS=Salmonella typhimurium GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 587          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SALTI (Biosynthetic arginine decarboxylase OS=Salmonella typhi GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 587          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SALSV (Biosynthetic arginine decarboxylase OS=Salmonella schwarzengrund (strain CVM19633) GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SALPB (Biosynthetic arginine decarboxylase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561          
The following BLAST results are available for this feature:
BLAST of CF832859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SPEA_TOLAT4.431e-1944.55Biosynthetic arginine decarboxylase OS=Tolumonas a... [more]
SPEA_SHEWM4.431e-1944.74Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEHH4.431e-1943.64Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHIFL5.787e-1945.79Biosynthetic arginine decarboxylase OS=Shigella fl... [more]
SPEA_SHIF85.787e-1945.79Biosynthetic arginine decarboxylase OS=Shigella fl... [more]
SPEA_SHEPW5.787e-1943.64Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SALTY5.787e-1945.79Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALTI5.787e-1945.79Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALSV5.787e-1945.79Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALPB5.787e-1945.79Biosynthetic arginine decarboxylase OS=Salmonella ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832859 ID=CF832859; Name=CF832859; organism=Citrus sinensis; type=EST; length=381bp
TTATCATGTGACTCTATCTATTTTCACTTCAATTCCGGATTATTGGGCCA
TTGCGTAGTTGTTTCCTATTGTTCCAATTCATCATTTGGATGAGAGGCCT
GGAGTGAGGGGGGTTTTATCGGATTTGACTTGTGATAGTGATGGTAAGAT
TGATAAGTTCATTGGTGGTGGTACGAGCTTGCCGTTACATGAAATGGTTG
GTGGTGGTTGTGGTGAGCGTGGGCCTTATTATTTGGGGATGTTCTTGGGC
GGGGCTTATGAGGAGGCCCTCGGTGGAGTCCACAACTTGTTTGGTGGTCC
AAGCGTGGTACGCGTCTTGCAGAGTGATGGTCCGCACAGCTTTGCTGTGA
CTCAGGCCATGCCTGGGCCGTCTTGTGGGGA
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