CF832859

Overview
NameCF832859
Unique NameCF832859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1040..1420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SALNS (Biosynthetic arginine decarboxylase OS=Salmonella newport (strain SL254) GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SALHS (Biosynthetic arginine decarboxylase OS=Salmonella heidelberg (strain SL476) GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SALDC (Biosynthetic arginine decarboxylase OS=Salmonella dublin (strain CT_02021853) GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SALCH (Biosynthetic arginine decarboxylase OS=Salmonella choleraesuis GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SALA4 (Biosynthetic arginine decarboxylase OS=Salmonella agona (strain SL483) GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_ECOSM (Biosynthetic arginine decarboxylase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_ECOLI (Biosynthetic arginine decarboxylase OS=Escherichia coli (strain K12) GN=speA PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 587
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_ECOL6 (Biosynthetic arginine decarboxylase OS=Escherichia coli O6 GN=speA PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 587
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_ECO5E (Biosynthetic arginine decarboxylase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561
[Close]
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_ECO57 (Biosynthetic arginine decarboxylase OS=Escherichia coli O157:H7 GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 49/107 (45.79%), Postives = 64/107 (59.81%), Query Frame = 2 
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 587
The following BLAST results are available for this feature:
BLAST of CF832859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SPEA_SALNS5.787e-1945.79Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALHS5.787e-1945.79Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALDC5.787e-1945.79Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALCH5.787e-1945.79Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_SALA45.787e-1945.79Biosynthetic arginine decarboxylase OS=Salmonella ... [more]
SPEA_ECOSM5.787e-1945.79Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ECOLI5.787e-1945.79Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ECOL65.787e-1945.79Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ECO5E5.787e-1945.79Biosynthetic arginine decarboxylase OS=Escherichia... [more]
SPEA_ECO575.787e-1945.79Biosynthetic arginine decarboxylase OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832859 ID=CF832859; Name=CF832859; organism=Citrus sinensis; type=EST; length=381bp
TTATCATGTGACTCTATCTATTTTCACTTCAATTCCGGATTATTGGGCCA
TTGCGTAGTTGTTTCCTATTGTTCCAATTCATCATTTGGATGAGAGGCCT
GGAGTGAGGGGGGTTTTATCGGATTTGACTTGTGATAGTGATGGTAAGAT
TGATAAGTTCATTGGTGGTGGTACGAGCTTGCCGTTACATGAAATGGTTG
GTGGTGGTTGTGGTGAGCGTGGGCCTTATTATTTGGGGATGTTCTTGGGC
GGGGCTTATGAGGAGGCCCTCGGTGGAGTCCACAACTTGTTTGGTGGTCC
AAGCGTGGTACGCGTCTTGCAGAGTGATGGTCCGCACAGCTTTGCTGTGA
CTCAGGCCATGCCTGGGCCGTCTTGTGGGGA
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