CF832859

Overview
NameCF832859
Unique NameCF832859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_ALHEH (Biosynthetic arginine decarboxylase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=speA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.787e-19
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 2
Query:   17 SIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI---GGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            S+F S+PD WAI  +FP++P+  LDE P  R VL DLTCDSDG I  ++   G  ++LPL     G      PY LG+FL GAY+E LG +HNLFG    V V
Sbjct:  461 SLFQSMPDVWAIDQIFPVLPLQRLDEPPASRAVLQDLTCDSDGCIRGYVDRDGVESTLPLPPWRPG-----EPYLLGIFLVGAYQEILGDMHNLFGDTHSVNV 558          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SHESH (Biosynthetic arginine decarboxylase OS=Shewanella sediminis (strain HAW-EB3) GN=speA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.557e-19
Identity = 50/114 (43.86%), Postives = 68/114 (59.65%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGP-SVVRVLQSDG 331
            + V  S+F S+PD W I  +FPI+P+  LD+ P  R V+ D+TCDSDG ID+++ G    T++P+            PY +G FL GAY+E LG +HNLFG   S V  L  DG
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPIMPLSGLDKAPERRAVMLDITCDSDGTIDQYVDGQGIETTIPVPTW-----SAESPYLIGFFLVGAYQEILGDMHNLFGDTNSAVVRLDDDG 572          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SHEPA (Biosynthetic arginine decarboxylase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=speA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.557e-19
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG--GPSVVRV 316
            + V  S+F S+PD W I  +FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+         +  PY +G FL GAY+E LG +HNLFG    +VVR+
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPESRAVMLDITCDSDGTVDQYVEGQGIETTLPVPAWT-----QESPYLIGFFLVGAYQEILGDMHNLFGDTNSAVVRL 568          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_PASMU (Biosynthetic arginine decarboxylase OS=Pasteurella multocida GN=speA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.557e-19
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAV 349
            +V  S+F S+PD W I  LFP+ PI +L++    R VL D+TCDSDG ID +I G    T++P+         E  P  LG F+ GAY+E LG +HNLFG  S V VL  +   ++ V
Sbjct:  472 YVNFSLFQSLPDAWGIDQLFPVCPISNLNQPVSRRAVLLDITCDSDGTIDHYIDGDGITTTMPMPHY-----EEDNPPLLGFFMVGAYQEILGNMHNLFGDTSTVDVLVHEQDKAYIV 584          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SHESW (Biosynthetic arginine decarboxylase OS=Shewanella sp. (strain W3-18-1) GN=speA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.684e-18
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG--GPSVVRV 316
            + V  S+F S+PD W I  +FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G FL GAY+E LG +HNLFG    +VVR+
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSAESPYLIGFFLVGAYQEILGDMHNLFGDTNSAVVRI 568          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SHEPC (Biosynthetic arginine decarboxylase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=speA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.684e-18
Identity = 47/110 (42.73%), Postives = 68/110 (61.82%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG--GPSVVRV 316
            + V  S+F S+PD W I  +FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G FL GAY+E LG +HNLFG    +VVR+
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWSAESPYLIGFFLVGAYQEILGDMHNLFGDTNSAVVRI 568          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_HAMD5 (Biosynthetic arginine decarboxylase OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=speA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.684e-18
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFPI+P+  L++RP  R VL D+TCDSDG I+ ++ G     +LP+            P  LG F+ GAY+E LG +HNLFG  +VV V
Sbjct:  461 YVNFSLFQSLPDAWGINQLFPILPLEGLNQRPERRAVLLDITCDSDGIIEHYVDGDGVANTLPIPPY-----DAENPPILGFFMVGAYQEILGNMHNLFGDTAVVEV 562          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_YERPE (Biosynthetic arginine decarboxylase OS=Yersinia pestis GN=speA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.199e-18
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+            P  LG F+ GAY+E LG +HNLFG  + V V
Sbjct:  487 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDKPPERRAVLLDITCDSDGTIDHYIDGDGVATTMPMPPY-----DPENPPLLGFFMVGAYQEILGNMHNLFGDTAAVDV 588          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_KLEP3 (Biosynthetic arginine decarboxylase OS=Klebsiella pneumoniae (strain 342) GN=speA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.199e-18
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            +V  S+F S+PD W I  LFP++P+  L++ P  R VL D+TCDSDG ID ++ G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVMPLEGLNKSPERRAVLLDITCDSDGAIDHYVDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPE2_THECC (Arginine decarboxylase (Fragment) OS=Theobroma cacao GN=SPE2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.199e-18
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKF 160
            Y++ LS+FTSIPD W I  LFPIVPIH LD+RPG RG+LSDLTCDSDGKI+KF
Sbjct:  354 YNINLSVFTSIPDLWGIDQLFPIVPIHKLDQRPGARGILSDLTCDSDGKINKF 406          
The following BLAST results are available for this feature:
BLAST of CF832859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SPEA_ALHEH5.787e-1949.51Biosynthetic arginine decarboxylase OS=Alkalilimni... [more]
SPEA_SHESH7.557e-1943.86Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEPA7.557e-1942.73Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_PASMU7.557e-1943.22Biosynthetic arginine decarboxylase OS=Pasteurella... [more]
SPEA_SHESW1.684e-1842.73Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEPC1.684e-1842.73Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_HAMD51.684e-1844.86Biosynthetic arginine decarboxylase OS=Hamiltonell... [more]
SPEA_YERPE2.199e-1844.86Biosynthetic arginine decarboxylase OS=Yersinia pe... [more]
SPEA_KLEP32.199e-1843.93Biosynthetic arginine decarboxylase OS=Klebsiella ... [more]
SPE2_THECC2.199e-1875.47Arginine decarboxylase (Fragment) OS=Theobroma cac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832859 ID=CF832859; Name=CF832859; organism=Citrus sinensis; type=EST; length=381bp
TTATCATGTGACTCTATCTATTTTCACTTCAATTCCGGATTATTGGGCCA
TTGCGTAGTTGTTTCCTATTGTTCCAATTCATCATTTGGATGAGAGGCCT
GGAGTGAGGGGGGTTTTATCGGATTTGACTTGTGATAGTGATGGTAAGAT
TGATAAGTTCATTGGTGGTGGTACGAGCTTGCCGTTACATGAAATGGTTG
GTGGTGGTTGTGGTGAGCGTGGGCCTTATTATTTGGGGATGTTCTTGGGC
GGGGCTTATGAGGAGGCCCTCGGTGGAGTCCACAACTTGTTTGGTGGTCC
AAGCGTGGTACGCGTCTTGCAGAGTGATGGTCCGCACAGCTTTGCTGTGA
CTCAGGCCATGCCTGGGCCGTCTTGTGGGGA
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