CF832859

Overview
NameCF832859
Unique NameCF832859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9870 contig Csv1_Contig9870:1040..1420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_MARAV (Biosynthetic arginine decarboxylase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=speA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.356e-18
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 2
Query:    8 VTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            V  S+F S+PD W I  +FP++PI+ L+     R V+ D+TCDSDG+ID+++ G    T+LPL E          P  +G F+ GAY+E LG +HNLFG    V V
Sbjct:  466 VNFSLFQSLPDVWGIDQIFPVMPINGLNRSLNRRAVIQDITCDSDGRIDQYVDGQGIETTLPLPEH-----DPESPLLMGFFMTGAYQEILGDMHNLFGDTHSVDV 566          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_SHEDO (Biosynthetic arginine decarboxylase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=speA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.861e-17
Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 2
Query:    8 VTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 328
            V  S+F S+PD W I  +FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G F+ GAY+E LG +HNLFG  +   V   D
Sbjct:  466 VNFSLFQSLPDAWGIDQVFPVLPLTCLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPV-----PAWDPANPYLIGFFMVGAYQEILGDMHNLFGDTNSAVVFVED 570          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_PROMH (Biosynthetic arginine decarboxylase OS=Proteus mirabilis (strain HI4320) GN=speA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.416e-17
Identity = 46/108 (42.59%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 316
            ++V  S+F S+PD W I  LFP++PI  LD+    R VL D+TCDSDG ID ++ G    T++P+            P  +G F+ GAY+E LG +HNLFG  + V V
Sbjct:  461 FYVNFSLFQSLPDAWGIDQLFPVLPIEGLDKPLDRRAVLLDITCDSDGIIDHYVDGDGVETTMPM-----PAYDPEYPPMIGFFMVGAYQEILGNMHNLFGDTAAVDV 563          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_NEIMB (Biosynthetic arginine decarboxylase OS=Neisseria meningitidis serogroup B GN=speA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.238e-17
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVL 319
            +V  S+F S+PD W I  LFP+ PI  L+E    R VL D+TCDSDG ID +I G     ++P+ +       E  P  LG F+ GAY+E LG +HNLFG  +   V+
Sbjct:  458 YVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDHYIDGDGIAGTMPMPDY-----PEEEPPLLGFFMVGAYQEILGNMHNLFGDTATADVV 560          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_NEIMA (Biosynthetic arginine decarboxylase OS=Neisseria meningitidis serogroup A GN=speA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.238e-17
Identity = 47/108 (43.52%), Postives = 63/108 (58.33%), Query Frame = 2
Query:    5 HVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVL 319
            +V  S+F S+PD W I  LFP+ PI  L+E    R VL D+TCDSDG ID +I G     ++P+ +       E  P  LG F+ GAY+E LG +HNLFG  +   V+
Sbjct:  458 YVNFSLFQSLPDAWGIDQLFPVCPITGLNEPIARRAVLLDITCDSDGTIDHYIDGDGIAGTMPMPDY-----PEEEPPLLGFFMVGAYQEILGNMHNLFGDTATADVV 560          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_VIBVY (Biosynthetic arginine decarboxylase OS=Vibrio vulnificus (strain YJ016) GN=speA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.576e-16
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 328
            + V  S+F S+PD W I  +FP++P+  L      R V+ D+TCDSDG ID ++ G    ++LP+         E  PY +G FL GAY+E LG +HNLFG    V V   D
Sbjct:  468 FFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPV-----PAWNEDEPYLMGFFLVGAYQEILGDMHNLFGDTHSVVVNVGD 574          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_VIBVU (Biosynthetic arginine decarboxylase OS=Vibrio vulnificus GN=speA PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.576e-16
Identity = 46/112 (41.07%), Postives = 63/112 (56.25%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 328
            + V  S+F S+PD W I  +FP++P+  L      R V+ D+TCDSDG ID ++ G    ++LP+         E  PY +G FL GAY+E LG +HNLFG    V V   D
Sbjct:  469 FFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPV-----PAWNEDEPYLMGFFLVGAYQEILGDMHNLFGDTHSVVVNVGD 575          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_PHOLL (Biosynthetic arginine decarboxylase OS=Photorhabdus luminescens subsp. laumondii GN=speA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.058e-16
Identity = 45/112 (40.18%), Postives = 65/112 (58.04%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 328
            ++V  S+F S+PD W I  LFP++PI  LD+    R VL D+TCDSDG +D ++ G     ++P+       C    P  +G F+ GAY+E LG +HNLFG  + + V   D
Sbjct:  461 FYVNFSLFQSLPDAWGIDQLFPVLPIEGLDKPLDRRAVLLDITCDSDGIVDHYVDGDGVAATMPM-PAYDPDC----PPMIGFFMVGAYQEILGNMHNLFGDTAAIDVYVFD 567          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_VIBCH (Biosynthetic arginine decarboxylase OS=Vibrio cholerae GN=speA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.511e-16
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 2
Query:    2 YHVTLSIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG 295
            + V  S+F S+PD W I  +FP++P+  L+E    R V+ D+TCDSDG +++++ G    ++LP+            PY +G FL GAY+E LG +HNLFG
Sbjct:  468 FFVNFSLFQSLPDAWGIDQVFPVLPLSGLEEMNDRRAVMLDITCDSDGAVEQYVEGQGIESTLPVPAWTSD-----KPYLMGFFLVGAYQEILGDMHNLFG 563          
BLAST of CF832859 vs. ExPASy Swiss-Prot
Match: SPEA_AERS4 (Biosynthetic arginine decarboxylase OS=Aeromonas salmonicida (strain A449) GN=speA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.585e-16
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 2
Query:   17 SIFTSIPDYWAIA*LFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG 295
            S+F S+PD W I  +FP++P+  LD     RG+L D+TCDSDG+++ ++ G    ++LP+ +       E    Y+G FL GAY+E LG +HNLFG
Sbjct:  465 SLFQSLPDAWGIGQVFPVMPLTGLDRPLSRRGILMDITCDSDGQVEHYVDGLGVESTLPMPQY-----EENEVCYVGFFLVGAYQEILGDLHNLFG 555          
The following BLAST results are available for this feature:
BLAST of CF832859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SPEA_MARAV8.356e-1843.40Biosynthetic arginine decarboxylase OS=Marinobacte... [more]
SPEA_SHEDO1.861e-1740.91Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_PROMH5.416e-1742.59Biosynthetic arginine decarboxylase OS=Proteus mir... [more]
SPEA_NEIMB9.238e-1743.52Biosynthetic arginine decarboxylase OS=Neisseria m... [more]
SPEA_NEIMA9.238e-1743.52Biosynthetic arginine decarboxylase OS=Neisseria m... [more]
SPEA_VIBVY1.576e-1641.07Biosynthetic arginine decarboxylase OS=Vibrio vuln... [more]
SPEA_VIBVU1.576e-1641.07Biosynthetic arginine decarboxylase OS=Vibrio vuln... [more]
SPEA_PHOLL2.058e-1640.18Biosynthetic arginine decarboxylase OS=Photorhabdu... [more]
SPEA_VIBCH3.511e-1640.59Biosynthetic arginine decarboxylase OS=Vibrio chol... [more]
SPEA_AERS44.585e-1642.71Biosynthetic arginine decarboxylase OS=Aeromonas s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832859 ID=CF832859; Name=CF832859; organism=Citrus sinensis; type=EST; length=381bp
TTATCATGTGACTCTATCTATTTTCACTTCAATTCCGGATTATTGGGCCA
TTGCGTAGTTGTTTCCTATTGTTCCAATTCATCATTTGGATGAGAGGCCT
GGAGTGAGGGGGGTTTTATCGGATTTGACTTGTGATAGTGATGGTAAGAT
TGATAAGTTCATTGGTGGTGGTACGAGCTTGCCGTTACATGAAATGGTTG
GTGGTGGTTGTGGTGAGCGTGGGCCTTATTATTTGGGGATGTTCTTGGGC
GGGGCTTATGAGGAGGCCCTCGGTGGAGTCCACAACTTGTTTGGTGGTCC
AAGCGTGGTACGCGTCTTGCAGAGTGATGGTCCGCACAGCTTTGCTGTGA
CTCAGGCCATGCCTGGGCCGTCTTGTGGGGA
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