CF832876

Overview
NameCF832876
Unique NameCF832876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_THICR (Triosephosphate isomerase OS=Thiomicrospira crunogena (strain XCL-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.174e-27
Identity = 62/120 (51.67%), Postives = 85/120 (70.83%), Query Frame = 3
Query:  174 GAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            GA+TGE SA ML ++   +VILGHSERRA+  E++  +  KV  AL  GL  I CVGETLE+RESG   +V+++Q  A+  +  I  + +VV+AYEPVWAIGTGK A+  +AQ+VHA ++
Sbjct:   73 GAYTGETSASMLKDVGCQYVILGHSERRAIYGETDQDIAAKVKTALDSGLTPILCVGETLEERESGQLESVISQQLDAVISEVGIDQFADVVIAYEPVWAIGTGKTASAQQAQDVHAFIR 192          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPW (Triosephosphate isomerase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.174e-27
Identity = 64/140 (45.71%), Postives = 87/140 (62.14%), Query Frame = 3
Query:  144 AAQNCWVRKG---------GAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKDATPARAQEVHAELKK 530
            A   C VR G         GA+TGE+S +ML +    +VI+GHSERR +  E++D V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP +AQEVHA ++K
Sbjct:   61 ALNGCLVRMGTQNVSQHDFGAYTGEISGQMLKDSGCRYVIIGHSERRRMYGETSDIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRK 200          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_PARD8 (Triosephosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.174e-27
Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            VAA+NC  ++ GA+TGEVSA M+A+    +VILGHSERRA  +E+ + +  KV  AL+ GL  I C+GE LE+RE+G    VV  Q       +S  ++  ++LAYEPVWAIGTGK A+  +A+E+HA ++
Sbjct:   62 VAAENCADKEKGAYTGEVSAAMVASTGAKYVILGHSERRAYYHETPEILKTKVELALANGLTPIFCIGEVLEEREAGKHFEVVDAQIAGSLFDLSAEDFGKIILAYEPVWAIGTGKTASAEQAEEIHAHIR 192          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBP (Triosephosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.174e-27
Identity = 64/136 (47.06%), Postives = 89/136 (65.44%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKDATPARAQEVHAELKK 530
            S   V AQN +     A TGE+S   LA L I  V++GHSERR  L E+++F   K++Y L  GL+V+ CVGET  +RE G+T +V+ +Q     + I++  + N+V+AYEPVWAIGTGK ATP  A+E HA ++K
Sbjct:   56 SQLIVGAQNAYQSGLTAMTGEISPVQLAELGIQTVLVGHSERRQFLGETSEFDNTKISYFLKHGLRVVYCVGETWAEREKGNTFSVLEDQIGKGLKGITSDLFKNLVIAYEPVWAIGTGKVATPVEAEEAHAFIRK 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBA (Triosephosphate isomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.174e-27
Identity = 64/136 (47.06%), Postives = 89/136 (65.44%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKDATPARAQEVHAELKK 530
            S   V AQN +     A TGE+S   LA L I  V++GHSERR  L E+++F   K++Y L  GL+V+ CVGET  +RE G+T +V+ +Q     + I++  + N+V+AYEPVWAIGTGK ATP  A+E HA ++K
Sbjct:   56 SQLIVGAQNAYQSGLTAMTGEISPVQLAELGIQTVLVGHSERRQFLGETSEFDNTKISYFLKHGLRVVYCVGETWAEREKGNTFSVLEDQIGKGLKGITSDLFKNLVIAYEPVWAIGTGKVATPVEAEEAHAFIRK 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.174e-27
Identity = 63/127 (49.61%), Postives = 82/127 (64.57%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVH 515
            + AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  S ++ VV+AYEPVWAIGTGK ATPA+AQ VH
Sbjct:   61 LGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDELIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGASAFEGVVIAYEPVWAIGTGKSATPAQAQAVH 187          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_ERWCT (Triosephosphate isomerase OS=Erwinia carotovora subsp. atroseptica GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.840e-27
Identity = 62/127 (48.82%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKDATPARAQEVH 515
            + AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++F+  K       GL  + C+GET  + E+G T AV A Q  A+   +    ++N V+AYEPVWAIGTGK ATPA+AQ VH
Sbjct:   61 LGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKKFGVLKDAGLIPVLCIGETEAENEAGQTEAVCARQLDAVLNTLGAKAFENTVVAYEPVWAIGTGKSATPAQAQAVH 187          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_ENTCL (Triosephosphate isomerase OS=Enterobacter cloacae GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.840e-27
Identity = 62/127 (48.82%), Postives = 82/127 (64.57%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVH 515
            + AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++F+  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++  V+AYEPVWAIGTGK ATPA+AQ VH
Sbjct:   61 LGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVH 187          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_CORDI (Triosephosphate isomerase OS=Corynebacterium diphtheriae GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.840e-27
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 3
Query:  147 AQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            AQ+    + GA+TGE+SA+MLA L   WV++GHSERR    ES++ V  K   AL+QG+  I CVGE LE RE+G+ V  V EQT+A    ++  D    V+AYEPVWAIGTGK A+ A AQEV A ++
Sbjct:   68 AQDVSQHEAGAYTGEISAQMLAKLGCTWVVVGHSERREYHGESSELVAVKAKAALNQGISPIVCVGEPLEIREAGTHVEYVVEQTRASLAGLTADDLAKTVIAYEPVWAIGTGKVASAADAQEVCAAIR 196          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_BDEBA (Triosephosphate isomerase OS=Bdellovibrio bacteriovorus GN=tpiA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.840e-27
Identity = 61/137 (44.53%), Postives = 85/137 (62.04%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAEL 524
            +S+  +     AQNC+ +  GAFTGE SA+++ +L   +V++GHSERRA+  E +  V DKVA+    GL  + C+GETL++RES  T  V+  Q      K      VV+AYEPVWAIGTGK ATP +  E H ++
Sbjct:   50 ESLKGTSIKFGAQNCYFQAQGAFTGENSAQVVKDLGGSYVLIGHSERRAIFGEGDALVADKVAFVQGLGLTPMLCIGETLQERESAKTFRVLETQLNLGLAKADKTKPVVVAYEPVWAIGTGKVATPEQVAETHTDV 186          
The following BLAST results are available for this feature:
BLAST of CF832876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_THICR2.174e-2751.67Triosephosphate isomerase OS=Thiomicrospira crunog... [more]
TPIS_SHEPW2.174e-2745.71Triosephosphate isomerase OS=Shewanella piezotoler... [more]
TPIS_PARD82.174e-2748.09Triosephosphate isomerase OS=Parabacteroides dista... [more]
TPIS_LEPBP2.174e-2747.06Triosephosphate isomerase OS=Leptospira biflexa se... [more]
TPIS_LEPBA2.174e-2747.06Triosephosphate isomerase OS=Leptospira biflexa se... [more]
TPIS_ENT382.174e-2749.61Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_ERWCT2.840e-2748.82Triosephosphate isomerase OS=Erwinia carotovora su... [more]
TPIS_ENTCL2.840e-2748.82Triosephosphate isomerase OS=Enterobacter cloacae ... [more]
TPIS_CORDI2.840e-2751.16Triosephosphate isomerase OS=Corynebacterium dipht... [more]
TPIS_BDEBA2.840e-2744.53Triosephosphate isomerase OS=Bdellovibrio bacterio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832876 ID=CF832876; Name=CF832876; organism=Citrus sinensis; type=EST; length=535bp
GGACATCTGAGGAATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGCCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGATGCAACCCCTGCTCGG
GCTCAGGAAGTCCATGCTGAACTGAAGAAATGGCT
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