CF832876

Overview
NameCF832876
Unique NameCF832876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.313e-40
Identity = 75/133 (56.39%), Postives = 102/133 (76.69%), Query Frame = 3
Query:  135 FHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            F VAAQNC+    GAFTGE+S  M+ +  + WVILGHSERR +  ES++ +G KV++ALS+GL V+AC+GE L++RE+G T  VV E T+ IA+ + +W  VVLAYEPVWAIGTGK A+P ++QE+H +L+KW
Sbjct:   58 FGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKW 190          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 1.715e-40
Identity = 79/140 (56.43%), Postives = 105/140 (75.00%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            +++L  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL++GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI +W NVV+AYEPVWAIGTG+ ATP +AQEVHA L++W
Sbjct:   51 RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQW 190          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.240e-40
Identity = 80/140 (57.14%), Postives = 101/140 (72.14%), Query Frame = 3
Query:  123 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            L+ + HVAAQNC+    GAFTGE+S  M+ ++   WVILGHSERR +  ES++ + +KV +AL++GL VIAC+GETL +RES  T  V   Q KAIA KI +   W  VV+AYEPVWAIGTGK ATP +AQEVH  L+KW
Sbjct:   56 LKKEIHVAAQNCYKVSKGAFTGEISPAMIRDIGCDWVILGHSERRNIFGESDELIAEKVQHALAEGLSVIACIGETLSERESNKTEEVCVRQLKAIANKIKSADEWKRVVVAYEPVWAIGTGKVATPQQAQEVHNFLRKW 195          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.240e-40
Identity = 80/140 (57.14%), Postives = 101/140 (72.14%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            +S L     VAAQNC+    GAFTGE+S  M+ +  I WVILGHSERR +  ES++ +G KVA+ L   L VIAC+GE LE+RE+G+T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK A+P +AQEVH +L+ W
Sbjct:   52 RSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKDCGIDWVILGHSERRHVFGESDELIGQKVAHCLESDLGVIACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGW 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.516e-39
Identity = 82/177 (46.33%), Postives = 111/177 (62.71%), Query Frame = 3
Query:   12 ELKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERR--ALLNESNDFVGDKVAYALSQG-LKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            ++ ++VS  N A                      +  LR+DF  +AQN W+ KGGAFTGE+ A M+ ++   WVILGHSERR  A L ES+  +  K AYAL    L VI C+GE LE+RESG T+AV   Q +A+++ IS+W +VV+AYEPVWAIGTGK ATP +A++VH  ++ W
Sbjct:   10 DIAELVSAFNAAPPIDAAHVQVVVAPPAVYLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAW 186          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 7.966e-38
Identity = 77/135 (57.04%), Postives = 99/135 (73.33%), Query Frame = 3
Query:  135 FHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            F +AAQN  + K GAFTGEVS  +L +  + W++LGHSERRA   E+N+ V DKVA A++ G  VIAC+GETL++RESG T  VV  Q  AIA+K+  ++W  VV+AYEPVWAIGTGK ATP +AQE HA ++ W
Sbjct:   60 FVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSW 193          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.775e-37
Identity = 74/134 (55.22%), Postives = 95/134 (70.90%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            +AA+NC+    GAFTGE+S EM+ +    WVILGHSERR +  ESN+ +G+KV +AL  GL VI C+GE L +RE+G T  V   Q  AIA+ + +   WD VV+AYEPVWAIGTGK ATPA+AQEVH  ++ W
Sbjct:   60 IAAENCYKVGSGAFTGEISTEMIKDCGCEWVILGHSERRHIFGESNELIGEKVKHALDSGLNVIPCIGELLSEREAGKTNDVCFAQMDAIAKNVPSKEAWDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDW 193          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.027e-37
Identity = 77/135 (57.04%), Postives = 97/135 (71.85%), Query Frame = 3
Query:  135 FHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            F +AAQN  + + GAFTGEVS ++L +  I WV+LGHSERR    E+N+ V +KVA A + G  VI CVGET E+RE+G T AVV  Q  A+A+K+S   W  VV+AYEPVWAIGTGK ATP +AQEVH  L++W
Sbjct:   61 FQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRW 194          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.953e-37
Identity = 78/177 (44.07%), Postives = 110/177 (62.15%), Query Frame = 3
Query:    3 TSEELKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            T ++LK IV  LN A+                     +++ + +  VAAQN + +  GAFTGE+SA  L +L + WVILGHSERR  L ES++F+  K  YAL  G+ VI C GE+ + R++G T+  V  Q  A+A++I++W NVV+AYEP+WAIGTG  AT  +AQEVHA ++ W
Sbjct:   16 TRKDLKAIVDNLNNAQLDPNAEVVIAPPALYLDFVK-QNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERRNELGESDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSW 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.150e-36
Identity = 75/177 (42.37%), Postives = 109/177 (61.58%), Query Frame = 3
Query:    3 TSEELKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            T   +K+IV  LN A+                       V +S   V AQN +++  GAFTGE S + + ++   WVILGHSERR    E +  + +K A+ALSQG+ VI C+GETL+Q+++G+T+ VV  Q +A+ +K+ +W NVV+AYEPVWAIGTG  ATP  AQE+H  ++++
Sbjct:   16 TKSSIKEIVERLNNAKLDPKVEVVLCPPAPYLDYTV-SLVKKSQVSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFALSQGVGVILCIGETLDQKKAGTTLQVVERQLQAVIDKVKDWSNVVIAYEPVWAIGTGLAATPEDAQEIHHSIREF 191          
The following BLAST results are available for this feature:
BLAST of CF832876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_LATCH1.313e-4056.39Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_DROME1.715e-4056.43Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_SCHMA2.240e-4057.14Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPISA_DANRE2.240e-4057.14Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_GRAVE5.516e-3946.33Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_TRYBB7.966e-3857.04Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_TAESO1.775e-3755.22Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_TRYCR3.027e-3757.04Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_NEUCR3.953e-3744.07Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_ZYGBA1.150e-3642.37Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02J15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832876 ID=CF832876; Name=CF832876; organism=Citrus sinensis; type=EST; length=535bp
GGACATCTGAGGAATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGCCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGATGCAACCCCTGCTCGG
GCTCAGGAAGTCCATGCTGAACTGAAGAAATGGCT
back to top