CF832876

Overview
NameCF832876
Unique NameCF832876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:144..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.114e-31
Identity = 70/130 (53.85%), Postives = 87/130 (66.92%), Query Frame = 3
Query:  138 HVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            H+AAQNC     GAFTGEVS  ML      +VI+GHSERR    ++N  V  KV  ALS GL VI CVGETL++RE G T  VV  Q K   E +++  ++V+AYEPVWAIGTGK A+  +AQEVHA ++
Sbjct:   61 HLAAQNCHYEDDGAFTGEVSVRMLDEAGCSYVIVGHSERRQYFGDTNPVVNLKVKKALSAGLNVILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIR 190          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.455e-31
Identity = 71/132 (53.79%), Postives = 89/132 (67.42%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKDATPARAQEVHAELKK 530
            + AQ+    + GA+TGEVS  ML      +VI+GHSERRA   E+N+ +  K   AL+ GL  I CVGETL+QRE+G T +VVAEQ   +   I+  D   +V+AYEPVWAIGTGK ATPA AQEVHA L+K
Sbjct:   60 LGAQDVSSHEAGAYTGEVSTSMLQEFDCRYVIVGHSERRAYFAETNELIAQKTVRALNAGLTPIVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRK 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPB (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.234e-31
Identity = 68/133 (51.13%), Postives = 88/133 (66.17%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            SD  + AQNC     GA+TGEVS  ML +L   ++I+GHSERR    E+N  V  ++  AL  G++VI C+GETLE+RE+G T A+V  Q +     I +  NVVLAYEPVWAIGTGK ATP +A  VHA ++
Sbjct:   58 SDICLVAQNCHYEDEGAYTGEVSVRMLDSLGCSYIIVGHSERRQYFGETNRTVNLRLKKALEGGMRVILCIGETLEEREAGVTDAIVTAQVREGLADIEDLGNVVLAYEPVWAIGTGKTATPEQADAVHASIR 190          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.529e-31
Identity = 64/135 (47.41%), Postives = 94/135 (69.63%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN----WDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            +AAQN ++   GA+TGE S EML ++ +  VI+GHSERR ++ E+N+    K   AL +G+ VI C GETL++R++ +T+ V   Q +A+ ++I      W+NVV+AYEPVW+IGTG  ATP +A+EVH  L+KW
Sbjct:   62 IAAQNVYLEGNGAWTGETSVEMLLDMGLSHVIIGHSERRRIMGETNEQSAKKAKRALDKGMTVIFCTGETLDERKANNTMEVNIAQLEALKKEIGESKKLWENVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKW 196          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.101e-30
Identity = 71/136 (52.21%), Postives = 86/136 (63.24%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKDATPARAQEVHAELKK 530
            S   + AQ+      GA+TGEVS  ML   +  +VI+GHSERRA   E+N+ V  K   ALS GL  I CVGETLEQRE+G T  VV  Q  A+   I+  D   +V+AYEPVWAIGTGK ATP  AQEVH  L++
Sbjct:   56 STIALGAQDVSSHDSGAYTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRR 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_FUSNN (Triosephosphate isomerase OS=Fusobacterium nucleatum subsp. nucleatum GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.101e-30
Identity = 68/140 (48.57%), Postives = 92/140 (65.71%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            K V  S+  +AA+N + +  GA+TGEVS +ML ++ + +VILGHSERR    ES++F+  KV   L  G+K I C+GE LE RE G T+ V+A+Q K     +S  D    ++AYEPVWAIGTGK ATP  AQE H E++
Sbjct:   52 KIVEGSNVKIAAENVYPKIEGAYTGEVSPKMLKDIGVTYVILGHSERREYFKESDEFINQKVKAVLEIGMKPILCIGEKLEDREGGKTLEVLAKQIKEGLVDLSKEDAEKTIVAYEPVWAIGTGKTATPEMAQETHKEIR 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.101e-30
Identity = 70/138 (50.72%), Postives = 89/138 (64.49%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            K +  S   + AQNC     GA+TGEVSA ML       VI+GHSERR    E+N  V  +V  AL++GL VI CVGETL +RESG T  +V+ Q +     +S+  NVV+AYEPVWAIGTGK AT A+A+EVH  ++
Sbjct:   53 KVIAGSTIQLVAQNCHYENDGAYTGEVSAAMLKGAGCSSVIIGHSERRQFFGETNATVNLRVKKALAEGLDVILCVGETLAERESGVTGDIVSAQVREGLVGVSDISNVVIAYEPVWAIGTGKTATSAQAEEVHLMIR 190          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.681e-30
Identity = 66/132 (50.00%), Postives = 93/132 (70.45%), Query Frame = 3
Query:  141 VAAQNCWVRKG-GAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            V AQ+C ++ G GA TGEVSA+ L +L   WV++GHSERR +L E+++ V  K A A + GLK + C+GETLE+RE+G T+ VVA Q   + +   +  + + V+AYEPVWAIG+G  ATP +AQEVHA ++
Sbjct:   60 VGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIR 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.681e-30
Identity = 67/142 (47.18%), Postives = 98/142 (69.01%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            +S +     + +QN   ++ GAFTGEVSA MLA +   +VI+GHSERRAL  E++  +  K A+A + GL  I CVGETLE+R+SG+T  +V  Q +A+ +   ++ + N ++AYEPVWAIGTGK A+P +AQ VHA L+++
Sbjct:   49 RSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQF 190          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            V A+NC  ++ GA+TGEVSA M+A+    +VILGHSERRA   E+ + + DKV  AL+ GL  I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PA+AQE+HA ++
Sbjct:   62 VGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIR 191          
The following BLAST results are available for this feature:
BLAST of CF832876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PROA21.114e-3153.85Triosephosphate isomerase OS=Prosthecochloris aest... [more]
TPIS_JANMA1.455e-3153.79Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_CHLPB4.234e-3151.13Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPI2_GIALA5.529e-3147.41Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_HERAR2.101e-3052.21Triosephosphate isomerase OS=Herminiimonas arsenic... [more]
TPIS_FUSNN2.101e-3048.57Triosephosphate isomerase OS=Fusobacterium nucleat... [more]
TPIS_CHLCH2.101e-3050.72Triosephosphate isomerase OS=Chlorobium chlorochro... [more]
TPIS_PSEU54.681e-3050.00Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_ALCBS4.681e-3047.18Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_BACFR6.113e-3050.77Triosephosphate isomerase OS=Bacteroides fragilis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832876 ID=CF832876; Name=CF832876; organism=Citrus sinensis; type=EST; length=535bp
GGACATCTGAGGAATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGCCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGATGCAACCCCTGCTCGG
GCTCAGGAAGTCCATGCTGAACTGAAGAAATGGCT
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