CF832876

Overview
NameCF832876
Unique NameCF832876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:144..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.113e-30
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            V A+NC  ++ GA+TGEVSA M+A+    +VILGHSERRA   E+ + + DKV  AL+ GL  I C+GE LE+RE+     VVA Q  ++ +    ++  +VLAYEPVWAIGTGK A+PA+AQE+HA ++
Sbjct:   62 VGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIR 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.984e-30
Identity = 68/132 (51.52%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKDATPARAQEVHAELKK 530
            VAA+NC  ++ GA+TGEVSA M+A+    +VI+GHSERRA  +E++  + +KV  ALS GL  I CVGE LE+RE+G    VVA Q +     +   D   ++LAYEPVWAIGTGK AT  +AQE+HA ++K
Sbjct:   62 VAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRK 193          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.984e-30
Identity = 68/132 (51.52%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKDATPARAQEVHAELKK 530
            VAA+NC  ++ GA+TGEVSA M+A+    +VI+GHSERRA  +E++  + +KV  ALS GL  I CVGE LE+RE+G    VVA Q +     +   D   ++LAYEPVWAIGTGK AT  +AQE+HA ++K
Sbjct:   62 VAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRK 193          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 7.984e-30
Identity = 69/125 (55.20%), Postives = 81/125 (64.80%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVH 515
            + AQNC     GAFTGEVSA M+       VI GHSERR    E+N  V  KV +ALS+GL+VI C GETLEQRE G T  VV  Q +     I +  N+V+AYEPVWAIGTGK AT  +A+EVH
Sbjct:   61 LVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVH 185          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTE (Triosephosphate isomerase OS=Chlorobium tepidum GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.043e-29
Identity = 69/133 (51.88%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            S   + AQNC     G FTGEVS  MLA     +VILGHSERR L  E+N  V  KV  AL++GL VI CVGETL++RE G T  +V  Q       +++   +V+AYEPVWAIGTGK AT  +AQEVHA ++
Sbjct:   53 SGIRLCAQNCHYESDGPFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNATVNLKVKKALAEGLSVILCVGETLDERERGVTGQIVTAQVVEGLIDVTDISKLVIAYEPVWAIGTGKTATKEQAQEVHALIR 185          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.362e-29
Identity = 67/137 (48.91%), Postives = 88/137 (64.23%), Query Frame = 3
Query:  117 SVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            +V  S   + +QNC   + GA+TGEVSA+M A++   WVILGHSERRAL  E+++ +  KV  A+  GL  I CVGETL  RESG    V  +Q  A+   +   D+ V+AYEPVWAIGTGK A+P  AQ +H  L+
Sbjct:   52 AVSDSMIELGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGETLADRESGRAEEVTLKQLDAVFMSVQPDDSWVVAYEPVWAIGTGKTASPEDAQSMHKALR 188          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.779e-29
Identity = 66/131 (50.38%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  147 AQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            AQ+C V   GAFTGE SA ML      + ++GHSERR +  ES++ V DK A     GL  + C+GETLEQ E+G T AVV  Q +A+  K  I++ +N V+ YEPVWAIGTGK ATP  AQE+ A ++ W
Sbjct:   63 AQDCDVNTSGAFTGENSAVMLKEFGCKYTLVGHSERRVIHGESSEVVADKFAVTPENGLVPVLCIGETLEQFEAGETKAVVEAQLQAVVTKSGITSLNNAVIGYEPVWAIGTGKTATPEIAQEIPAHIRSW 193          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIN (Triosephosphate isomerase OS=Leptospira interrogans GN=tpiA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.779e-29
Identity = 65/132 (49.24%), Postives = 89/132 (67.42%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKDATPARAQEVHAELKK 530
            V AQNC+     AFTGE S + L  + +  V++GHSERR  L ESN F  DK+ + L     V+ CVGETL +RESG T+ V++ Q +   + I +  + N++LAYEPVWAIGTGK ATP++AQEVH+ ++K
Sbjct:   62 VGAQNCYHSGLAAFTGETSPDQLKEIGVKVVMVGHSERRQFLGESNFFCNDKIRFLLKNEFTVLYCVGETLSERESGKTLEVLSSQIREGLKGIDSVFFSNLILAYEPVWAIGTGKVATPSQAQEVHSFIRK 193          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIC (Triosephosphate isomerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=tpiA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.779e-29
Identity = 65/132 (49.24%), Postives = 89/132 (67.42%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKDATPARAQEVHAELKK 530
            V AQNC+     AFTGE S + L  + +  V++GHSERR  L ESN F  DK+ + L     V+ CVGETL +RESG T+ V++ Q +   + I +  + N++LAYEPVWAIGTGK ATP++AQEVH+ ++K
Sbjct:   62 VGAQNCYHSGLAAFTGETSPDQLKEIGVKVVMVGHSERRQFLGESNFFCNDKIRFLLKNEFTVLYCVGETLSERESGKTLEVLSSQIREGLKGIDSVFFSNLILAYEPVWAIGTGKVATPSQAQEVHSFIRK 193          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPISL_HUMAN (Putative triosephosphate isomerase-like protein LOC286016 OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.779e-29
Identity = 64/131 (48.85%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            VA QNC+    GAFTGE+S  M+ +L + WV+                   KVA+AL++ L VIAC+GE L++RE+G T  VV EQTK IA+ + +W  V+LAY+PVWA GTGK ATP +AQEVH +L+ W
Sbjct:   62 VAPQNCYKVTNGAFTGEISPGMVKDLGVTWVV-------------------KVAHALAERLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVILAYDPVWATGTGKTATPQQAQEVHKKLRGW 173          
The following BLAST results are available for this feature:
BLAST of CF832876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACFN6.113e-3050.77Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_PORGI7.984e-3051.52Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG37.984e-3051.52Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_CHLPD7.984e-3055.20Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_CHLTE1.043e-2951.88Triosephosphate isomerase OS=Chlorobium tepidum GN... [more]
TPIS_HAHCH1.362e-2948.91Triosephosphate isomerase OS=Hahella chejuensis (s... [more]
TPIS_VIBSA1.779e-2950.38Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]
TPIS_LEPIN1.779e-2949.24Triosephosphate isomerase OS=Leptospira interrogan... [more]
TPIS_LEPIC1.779e-2949.24Triosephosphate isomerase OS=Leptospira interrogan... [more]
TPISL_HUMAN1.779e-2948.85Putative triosephosphate isomerase-like protein LO... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832876 ID=CF832876; Name=CF832876; organism=Citrus sinensis; type=EST; length=535bp
GGACATCTGAGGAATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGCCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGATGCAACCCCTGCTCGG
GCTCAGGAAGTCCATGCTGAACTGAAGAAATGGCT
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