CF832876

Overview
NameCF832876
Unique NameCF832876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:144..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_PELPB (Triosephosphate isomerase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.323e-29
Identity = 66/134 (49.25%), Postives = 87/134 (64.93%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVH 515
            K +  S+  + AQNC     GAFTGEVSA M+  +    VI+GHSERR    E+N  V  ++  ALS+GL VI CVGETL +RESG    V++ Q +   + I +   +V+AYEPVWAIGTGK A+ A+A+EVH
Sbjct:   53 KVIAESEVQLVAQNCHYENDGAFTGEVSARMILAVGCSSVIIGHSERRQYFGETNATVNLRIKKALSEGLNVILCVGETLAERESGVMETVISSQVREGLDGIIDISAIVIAYEPVWAIGTGKTASSAQAEEVH 186          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.323e-29
Identity = 62/135 (45.93%), Postives = 92/135 (68.15%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN----WDNVVLAYEPVWAIGTGKDATPARAQEVHAELKKW 533
            +AAQN ++   GA+TGE S EML ++ +  VI+GHSERR ++ E+++    K   AL +G+ VI CVGETL++R++  T+ V   Q +A+ +++      W  VV+AYEPVW+IGTG  ATP +A+EVH  L+KW
Sbjct:   62 IAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGETLDERKANRTMEVNIAQLEALGKELGESKMLWKEVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKW 196          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_RUTMC (Triosephosphate isomerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=tpiA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 5.175e-29
Identity = 63/138 (45.65%), Postives = 94/138 (68.12%), Query Frame = 3
Query:  120 VLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            V+ S  ++ AQN  V K GAFTGE+SA+M+ +    +VI+GHSERR+L  E+++ V  KV  AL   L  + C+GE LE RES +T +VV++Q + + ++  I  + N+++AYEPVWAIGT   ATP +AQ+ HA ++
Sbjct:   53 VVDSQLNLGAQNLNVNKLGAFTGEISADMIKDFGAKYVIVGHSERRSLYGETDEIVAQKVQVALDNNLTPLFCIGELLEDRESNNTKSVVSKQIQVVIDRVGIEAFKNIIVAYEPVWAIGTNVTATPQQAQDTHAFIR 190          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_VESOH (Triosephosphate isomerase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=tpiA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.759e-29
Identity = 63/135 (46.67%), Postives = 92/135 (68.15%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE--KISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            S  ++ AQ+  + K GAFTGEVS +M+ +    +VI+GHSERR+L  E+N+ V  KV  AL+  L  + C+GE LE R+SG T  VV+EQ +A+ +   I  + ++++AYEPVWAIGTG  ATP +AQ+ HA ++
Sbjct:   56 SQLNLGAQDLNINKSGAFTGEVSVDMIKDFGARYVIVGHSERRSLYFENNEIVAQKVQVALNNNLTPLLCIGELLEDRDSGKTQEVVSEQIQAVIDLVGIDAFKDIIVAYEPVWAIGTGITATPQQAQDTHAFIR 190          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29
Identity = 64/136 (47.06%), Postives = 89/136 (65.44%), Query Frame = 3
Query:  126 RSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            +SD  VAAQNC+    GAFTGEVS  +L +    +VI+GHSERR L  ES+ F+  KV   +  GL  I C+GETLE+RE+  T  V+  Q +   E +  +  + +V+AYEPVWAIGTGK AT ++AQ+ H+ ++
Sbjct:   56 KSDISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKVKAVIDAGLSAILCIGETLEEREADKTFDVLERQVRCGLEGLDAAAMEQIVVAYEPVWAIGTGKTATDSQAQQAHSFIR 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29
Identity = 70/140 (50.00%), Postives = 89/140 (63.57%), Query Frame = 3
Query:  120 VLRSDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA----IAEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            V  S   + AQN  V   GAFTGE+S EML ++   +VILGHSERR L  E+N+ V  KVA A   GL  I CVGETLEQRE+  T+ V+ +Q  A    +    +    +V+AYEPVWAIGTGK A+ A+AQE HA ++
Sbjct:   55 VAGSGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIR 194          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.828e-29
Identity = 64/130 (49.23%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI-AEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            V A+NC  +  GA+TGEVSAEM+A+    +VILGHSERRA   E+   + +KV  AL+ GL  I C+GE LE+RE+     VVA Q +++ +    ++  ++LAYEPVWAIGTGK A+P +AQE+HA ++
Sbjct:   62 VGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIR 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_OCEIH (Triosephosphate isomerase OS=Oceanobacillus iheyensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.506e-28
Identity = 67/136 (49.26%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKDATPARAQEVHAELKK 530
            S+  VAAQN      GAFTGEVS  ML +L +  V+LGHSERR L  E+N+ V  K   A +  L  I CVGETL+QRE+  T+ +V EQ K     ++N      ++AYEPVWAIGTGK AT  +A EV  E++K
Sbjct:   57 SEVKVAAQNMHFEDSGAFTGEVSPVMLKDLGVTHVVLGHSERRELFAETNELVNKKTKAAFAHDLTPIVCVGETLDQREANETMNIVGEQVKQAVAGLTNEQVAETIIAYEPVWAIGTGKTATSEQANEVCTEIRK 192          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.506e-28
Identity = 64/130 (49.23%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI-AEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVHAELK 527
            V A+NC  +  GA+TGEVSAEM+A+    +VILGHSERRA  +E+ + + +KV  AL+  LK I C+GE LE+RE+     VVA Q  ++ +    ++  ++LAYEPVWAIGTGK AT  +AQE+HA ++
Sbjct:   62 VGAENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIR 191          
BLAST of CF832876 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.967e-28
Identity = 64/131 (48.85%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLANLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKDATPARAQEVH 515
            S  H+ AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++ VV+AYEPVWAIGTGK ATPA+AQ VH
Sbjct:   57 SHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVH 187          
The following BLAST results are available for this feature:
BLAST of CF832876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PELPB2.323e-2949.25Triosephosphate isomerase OS=Pelodictyon phaeoclat... [more]
TPI1_GIALA2.323e-2945.93Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_RUTMC5.175e-2945.65Triosephosphate isomerase OS=Ruthia magnifica subs... [more]
TPIS_VESOH6.759e-2946.67Triosephosphate isomerase OS=Vesicomyosocius okuta... [more]
TPIS_PELCD8.828e-2947.06Triosephosphate isomerase OS=Pelobacter carbinolic... [more]
TPIS_MAGSM8.828e-2950.00Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_BACTN8.828e-2949.23Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_OCEIH1.506e-2849.26Triosephosphate isomerase OS=Oceanobacillus iheyen... [more]
TPIS_BACV81.506e-2849.23Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_KLEPN1.967e-2848.85Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832876 ID=CF832876; Name=CF832876; organism=Citrus sinensis; type=EST; length=535bp
GGACATCTGAGGAATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGCCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGATGCAACCCCTGCTCGG
GCTCAGGAAGTCCATGCTGAACTGAAGAAATGGCT
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