CF832877

Overview
NameCF832877
Unique NameCF832877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:288..1099. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_XYLF2 (Triosephosphate isomerase OS=Xylella fastidiosa (strain M23) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.926e-32
Identity = 81/189 (42.86%), Postives = 110/189 (58.20%), Query Frame = -3
Query:  250 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATV 810
            AQN      GA+TGEVSA M+ ++   + ++GHSERR   +E ++ V  K A ALS GL+ I CVGE+L QRE+G     +A Q   +   +        ++AYEPVWAIGTG+ A P+Q Q +HA +R  +     A +  S  I+YGG +   N  EL +Q DVDG L+GGASL  +    I  ATV
Sbjct:   62 AQNVSHHDKGAYTGEVSAAMVADVGAHYTLVGHSERREYHHEDSELVARKFAAALSAGLRPILCVGESLPQREAGQAEVAIAMQLAPVLALVGPQGVARGLIAYEPVWAIGTGRHADPSQVQAMHAFIRGEIA-RQDARIGDSLLILYGGGIKPCNAAELFSQQDVDGGLIGGASLVADDFLAIARATV 249          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_XANFL (Triosephosphate isomerase OS=Xanthobacter flavus GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.821e-32
Identity = 82/184 (44.57%), Postives = 108/184 (58.70%), Query Frame = -3
Query:  259 QNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 807
            Q+C   + GA TG++SAEML +     VILGHSERR    E +  V  KV  A   GL  + CVGETL +R++G   AVV  Q +    + +   ++V+AYEP+WAIGTG+  T     EVH  +R  L +   AE A   RI+YGGSV   N   L A  +VDG LVGGASLK  +F+ I ++
Sbjct:   65 QDCHPAESGAHTGDISAEMLRDAGAVAVILGHSERRIDHQEGDAIVKAKVKAAWRAGLLPVVCVGETLVERDAGEAAAVVTRQVRQSVPEGATAVSLVIAYEPIWAIGTGRTPTTDDVAEVHGAIRHILAERFGAE-ANGIRILYGGSVKPDNAAALLATANVDGALVGGASLKAADFLAIARA 247          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_PSYCK (Triosephosphate isomerase OS=Psychrobacter cryohalolentis (strain K5) GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.821e-32
Identity = 77/184 (41.85%), Postives = 108/184 (58.70%), Query Frame = -3
Query:  256 GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNW--------DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 783
            GA+TG+ SA+ +V+    W ILGHSERR    ESND +  K+ +ALSQ L V+ C+GE+  Q ++  T+ V+  Q   I E I+            +++AYEPVWAIGTGKV T A+    H  +++ L     A+  ++  ++YGGSVN  N    AA P +DG LVGGASLK +    I +A
Sbjct:   82 GAYTGDCSAQQIVDAGATWTILGHSERRQYHQESNDTLLQKMIHALSQDLGVVFCIGESQAQYDTKQTLEVIDNQLAVIKEFITQQPELIKALPTRLIIAYEPVWAIGTGKVPTVAEVSATHKHIKQILAG--FADSLSNMTVLYGGSVNADNANSFAADPMIDGALVGGASLKADSFLTIATA 263          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_ONYPE (Triosephosphate isomerase OS=Onion yellows phytoplasma GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.821e-32
Identity = 77/179 (43.02%), Postives = 107/179 (59.78%), Query Frame = -3
Query:  280 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 810
            AQN +    GAFTGEVS + L++L +  V+LGHSERR    E++  V  K+  AL   L    CVGE+L  +E+  T   + +Q   I   +      N+++AYEPVWAIGTGK ATP  A +V  ++R  +    S++ + + RIIYGGSV+ AN K +  QP +DG L G ASL+ E
Sbjct:   66 AQNMFYESEGAFTGEVSPQNLLSLGVKHVLLGHSERRTFFGETDQTVNLKLLSALKHKLVPTVCVGESLLTKENNQTQVFLDQQLTNIFAGVPEEALQNIIIAYEPVWAIGTGKSATPQDANKVIEQIRDKVTALYSSQASCAMRIIYGGSVSVANIKTILEQPAIDGILAGKASLQTE 244          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_SILST (Triosephosphate isomerase OS=Silicibacter sp. (strain TM1040) GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.991e-32
Identity = 80/174 (45.98%), Postives = 102/174 (58.62%), Query Frame = -3
Query:  286 QNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 807
            Q+C  +  GA TG++SA+ML +    +VI+GHSERRA   E +  V  K   A + GL  + C+GETLE+RE+G+T+ VV  Q           +N V+AYEPVWAIGTGKV T  Q  EVH  LR  L     A       ++YGGSV   N  E+    +VDG LVGGASLK
Sbjct:   60 QDCHAKTSGAHTGDLSADMLRDAGATYVIIGHSERRADHGEGDADVRAKTEAAQAAGLVAVVCIGETLEEREAGTTLEVVGAQLAGSLPDGVTAENTVVAYEPVWAIGTGKVPTLDQIAEVHDALRADLVARFGA-AGKDLPLLYGGSVKPGNAAEIFGVSNVDGALVGGASLK 232          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_MYCFL (Triosephosphate isomerase OS=Mycoplasma flocculare GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.991e-32
Identity = 78/183 (42.62%), Postives = 113/183 (61.75%), Query Frame = -3
Query:  265 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 810
            AQN      GAFTGE+SA+ML +L++ +VI+GHSERR +  E  + + +K+  A    L  + CVGE+L + E+  T  V+  Q   + + + N++  ++AYEP+WAIGTGK AT   A++V     K +K+N    +    R+IYGGSVN  N  EL  Q ++DG LVG ASL P EF+ I+
Sbjct:   66 AQNLSQFDSGAFTGEISAKMLQDLAVHYVIIGHSERREIFKEIGEDLTNKILQAQKYNLIPVFCVGESLSEFEANETEKVIIGQINEV-KSVLNFEKAIIAYEPIWAIGTGKTATAQIAEQV----CKLIKNNFGKNI----RVIYGGSVNSKNINELLLQKNIDGALVGKASLDPEEFVKIL 239          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_GRABC (Triosephosphate isomerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.991e-32
Identity = 81/178 (45.51%), Postives = 104/178 (58.43%), Query Frame = -3
Query:  280 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTK-AIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 810
            AQ+C + + GA TG++SAEMLV     WVILGHSERR    E ++ V +KV  A   GL  I CVGET ++R SG    +V  Q K ++ +  +   N V+AYEPVWAIGTG+ AT      +HA +R+ L      E     RI+YGGSV   N   L   P+V G LVGGASL  +
Sbjct:   63 AQDCHMARSGAHTGDLSAEMLVEAGAHWVILGHSERRRDHGELSETVREKVIAARQFGLTPIVCVGETEDERASGRETEIVGWQIKGSLPDGFAADSNGVIAYEPVWAIGTGRTATVEDVAMMHAFIREELVRQF-GEAGRGVRILYGGSVKPENAASLLRVPEVGGALVGGASLSAQ 239          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_SYNY3 (Triosephosphate isomerase OS=Synechocystis sp. (strain PCC 6803) GN=tpiA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.518e-32
Identity = 75/177 (42.37%), Postives = 104/177 (58.76%), Query Frame = -3
Query:  280 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 810
            AQN      GA+TGE+SA ML  + I +V++GHSERR    E+++    +V  A   GL  I CVGE+  QR++G T  V+ +Q K     +    N+V+AYEP+WAIGTG      +A  V   +R+ L +       +   I YGGSVN  N  E+ AQP++DG LVGGASL+P+
Sbjct:   64 AQNVHWEASGAYTGEISAAMLTEIGIHYVVIGHSERRQYFGETDETANLRVLAAQKAGLIPILCVGESKAQRDAGETEQVIVDQVKKGLVNVDQ-SNLVIAYEPIWAIGTGDTCAATEANRVIGLIREQLTN-------SQVTIQYGGSVNANNVDEIMAQPEIDGALVGGASLEPQ 232          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_ACICJ (Triosephosphate isomerase OS=Acidiphilium cryptum (strain JF-5) GN=tpiA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.513e-32
Identity = 84/195 (43.08%), Postives = 115/195 (58.97%), Query Frame = -3
Query:  247 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVV-AEQTKAIAEKISNWD------NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 810
            AQ+C V++ GA TG++SA++L  L    VILGHSERRA   ES+  V +K   A++ GL  I CVGET  +R+SG    VV A+   ++ E+++           ++AYEPVWAIGTG+  T      +HA +R  L+  + A   A+  I+YGGSV  +N   L A P+V G LVGGASLK E    I SA  +
Sbjct:   59 AQDCAVKRSGAHTGDLSADLLAELGATHVILGHSERRADHAESSATVREKARTAIAAGLVPIICVGETEAERDSGEAETVVRAQLAGSLPEELAGQTVPGVVAPGIIAYEPVWAIGTGRTPTEEDVAAMHASIRAALRRQLGA-AGATMPILYGGSVKPSNAASLLALPEVGGALVGGASLKAEDFLAIASAAAR 252          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGA (Triosephosphate isomerase OS=Mycoplasma gallisepticum GN=tpiA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.112e-31
Identity = 78/177 (44.07%), Postives = 112/177 (63.28%), Query Frame = -3
Query:  259 AFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 780
            A TG VS E L ++ + +VI+GHSERR L +ES++ +  KV   L   ++ I C+GETLE+ E+  T AV+ +Q +   + I +    ++++AYEPVWAIGTGK A+   AQ+  A +R  L    S  +A    I+YGGSV   N  EL AQ D++G LVGGASL P +FI +I++
Sbjct:   75 ANTGTVSYEQLKDIGVNYVIIGHSERRKLFHESDELINQKVKTLLENKMRPILCIGETLEEYEANKTKAVLKDQLEKDLKGIDSSLLKDLIIAYEPVWAIGTGKTASSQTAQDAIAYIRTVLGLLSSKTIANELPILYGGSVTPDNVSELLAQKDINGALVGGASLDPHKFIQLIEA 251          
The following BLAST results are available for this feature:
BLAST of CF832877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_XYLF22.926e-3242.86Triosephosphate isomerase OS=Xylella fastidiosa (s... [more]
TPIS_XANFL3.821e-3244.57Triosephosphate isomerase OS=Xanthobacter flavus G... [more]
TPIS_PSYCK3.821e-3241.85Triosephosphate isomerase OS=Psychrobacter cryohal... [more]
TPIS_ONYPE3.821e-3243.02Triosephosphate isomerase OS=Onion yellows phytopl... [more]
TPIS_SILST4.991e-3245.98Triosephosphate isomerase OS=Silicibacter sp. (str... [more]
TPIS_MYCFL4.991e-3242.62Triosephosphate isomerase OS=Mycoplasma flocculare... [more]
TPIS_GRABC4.991e-3245.51Triosephosphate isomerase OS=Granulibacter bethesd... [more]
TPIS_SYNY36.518e-3242.37Triosephosphate isomerase OS=Synechocystis sp. (st... [more]
TPIS_ACICJ8.513e-3243.08Triosephosphate isomerase OS=Acidiphilium cryptum ... [more]
TPIS_MYCGA1.112e-3144.07Triosephosphate isomerase OS=Mycoplasma gallisepti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832877 ID=CF832877; Name=CF832877; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTGCAGAAGGGAAAAGCAACCATTTATTAAATCCA
CAATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAA
TTCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACA
GACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACT
GCAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTC
ACTGTGGCAGACTTGATAATATCGATGAACTCCGGCTTTAAAGAAGCTCC
ACCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAAT
TTGCTCCATTTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACT
TCAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTC
CTGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTG
GCTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCTGCGATT
GCTTTTGTTTGTTCAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTG
TTCCAGAGTCTCTCCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTG
CATAAGCAACTTTATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCT
CTTCTTTCAGAATGACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAG
CATCTCAGCACTAACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGC
AATTTTGAGCAG
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