CF832877

Overview
NameCF832877
Unique NameCF832877
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:288..1099. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.160e-43
Identity = 99/191 (51.83%), Postives = 124/191 (64.92%), Query Frame = -3
Query:  253 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA----IAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAT 810
            AQN  V   GAFTGE+S EML ++   +VILGHSERR L  E+N+ V  KVA A   GL  I CVGETLEQRE+  T+ V+ +Q  A    +    +    +V+AYEPVWAIGTGKVA+ AQAQE HA +R  L   + A VA + RI+YGGS+   N KEL  Q DVDG L+GGA+LK  +F+ I+   T
Sbjct:   64 AQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIRGLLAKELGANVADAVRILYGGSMKPDNAKELLGQADVDGGLIGGAALKANDFLAIMDGLT 254          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 176.022 bits (445), Expect = 2.160e-43
Identity = 93/185 (50.27%), Postives = 120/185 (64.86%), Query Frame = -3
Query:  262 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIK 810
            AQN +    GAFTGE+S  ML  + + +VI+GHSERR +  E ++F+  KV   L +G+  I CVGETLE+RE G T  VV +Q +     +   +   VV+AYEPVWAIGTG+VATP QAQEVHA +RK L +    E A S RI+YGGS+   N   L  Q D+DG LVGGASLK  FI++ +
Sbjct:  463 AQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKESFIELAR 647          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPB (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.284e-43
Identity = 93/186 (50.00%), Postives = 119/186 (63.98%), Query Frame = -3
Query:  256 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 810
            AQNC     GA+TGEVS  ML +L   ++I+GHSERR    E+N  V  ++  AL  G++VI C+GETLE+RE+G T A+V  Q +     I +  NVVLAYEPVWAIGTGK ATP QA  VHA +R  + D      A   RI YGGSV  +N  EL   P++DG L+GGASLK  +F+ I+ +A
Sbjct:   64 AQNCHYEDEGAYTGEVSVRMLDSLGCSYIIVGHSERRQYFGETNRTVNLRLKKALEGGMRVILCIGETLEEREAGVTDAIVTAQVREGLADIEDLGNVVLAYEPVWAIGTGKTATPEQADAVHASIRATISDMYGEADAEDIRIQYGGSVKPSNAVELFGMPNIDGGLIGGASLKADDFVAIVNAA 249          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.284e-43
Identity = 90/176 (51.14%), Postives = 119/176 (67.61%), Query Frame = -3
Query:  286 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 810
            A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA  +E+ + + +KV  AL+  LK I C+GE LE+RE+     VVA Q  ++      ++  ++LAYEPVWAIGTGK AT  QAQE+HA +R  + D    EVA +T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:   64 AENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_OCEIH (Triosephosphate isomerase OS=Oceanobacillus iheyensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.072e-42
Identity = 96/189 (50.79%), Postives = 120/189 (63.49%), Query Frame = -3
Query:  253 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAT 810
            AQN      GAFTGEVS  ML +L +  V+LGHSERR L  E+N+ V  K   A +  L  I CVGETL+QRE+  T+ +V EQ K     ++N      ++AYEPVWAIGTGK AT  QA EV  E+RK + +  SA+VA    I YGGSV  AN  EL AQ D+DG LVGGASL PE F+ ++++ T
Sbjct:   63 AQNMHFEDSGAFTGEVSPVMLKDLGVTHVVLGHSERRELFAETNELVNKKTKAAFAHDLTPIVCVGETLDQREANETMNIVGEQVKQAVAGLTNEQVAETIIAYEPVWAIGTGKTATSEQANEVCTEIRKVVAEVTSADVAEKVIIQYGGSVKPANVDELLAQSDIDGALVGGASLDPESFLQLVEAGT 251          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.828e-42
Identity = 88/176 (50.00%), Postives = 119/176 (67.61%), Query Frame = -3
Query:  286 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 810
            A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA   E+   + +KV  AL+ GL  I C+GE LE+RE+     VVA Q +++      ++  ++LAYEPVWAIGTGK A+P QAQE+HA +R  + D    E+A +T I+YGGS   +N KEL + PDVDG L+GGA+LK
Sbjct:   64 AENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAKELFSNPDVDGGLIGGAALK 239          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.388e-42
Identity = 94/187 (50.27%), Postives = 124/187 (66.31%), Query Frame = -3
Query:  259 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 810
            A+NC  ++ GA+TGEVSA M+ +    +VI+GHSERRA  +E++  + +KV  ALS GL  I CVGE LE+RE+G    VVA Q +     +   D   ++LAYEPVWAIGTGK AT  QAQE+HA +RK +      EVA    I+YGGS N AN KEL ++ DVDG L+GGASL   +F+ II++
Sbjct:   64 AENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGLIGGASLSVDKFLPIIEA 250          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.388e-42
Identity = 94/187 (50.27%), Postives = 124/187 (66.31%), Query Frame = -3
Query:  259 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 810
            A+NC  ++ GA+TGEVSA M+ +    +VI+GHSERRA  +E++  + +KV  ALS GL  I CVGE LE+RE+G    VVA Q +     +   D   ++LAYEPVWAIGTGK AT  QAQE+HA +RK +      EVA    I+YGGS N AN KEL ++ DVDG L+GGASL   +F+ II++
Sbjct:   64 AENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGLIGGASLSVDKFLPIIEA 250          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.119e-42
Identity = 94/191 (49.21%), Postives = 128/191 (67.02%), Query Frame = -3
Query:  244 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKK 810
            +QN    + GA+TGEVS  ML NL+I +VI+GHSERR++  E++  V  KV  AL+ GL  I C+GE+  +R +G T  V++ Q + + ++  I  + +VV+AYEPVWAIGTGK A+ A AQE H  +RK+L    + +VA    ++YGGSVN ANC+EL AQ D+DG L+GGASLK E   II SA   K
Sbjct:   67 SQNVSEHESGAYTGEVSTAMLQNLAINYVIVGHSERRSIFKETSTQVAKKVHAALNAGLTPILCIGESEAERATGETETVLSAQIQPVIDEIGIEKFKDVVIAYEPVWAIGTGKTASSAMAQETHQFIRKFLAQQ-NEQVADKVPLLYGGSVNAANCEELFAQTDIDGGLIGGASLKAEQFKIICSAAKGK 256          
BLAST of CF832877 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.119e-42
Identity = 95/189 (50.26%), Postives = 122/189 (64.55%), Query Frame = -3
Query:  247 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVK 810
            AQNC     GA+TGEVSA ML       VI+GHSERR    E+N  V  +V  AL++GL VI CVGETL +RESG T  +V+ Q +     +S+  NVV+AYEPVWAIGTGK AT AQA+EVH  +R  + +      A + RI YGGSV  +N  EL A P++DG L+GGASL   +F+ I+++A  K
Sbjct:   64 AQNCHYENDGAYTGEVSAAMLKGAGCSSVIIGHSERRQFFGETNATVNLRVKKALAEGLDVILCVGETLAERESGVTGDIVSAQVREGLVGVSDISNVVIAYEPVWAIGTGKTATSAQAEEVHLMIRTLVTELYGEPAAQALRIQYGGSVKPSNAVELFAMPNIDGGLIGGASLNAADFVAIVQAAAGK 252          
The following BLAST results are available for this feature:
BLAST of CF832877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MAGSM2.160e-4351.83Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
PGKT_THEMA2.160e-4350.27Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_CHLPB6.284e-4350.00Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_BACV86.284e-4351.14Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_OCEIH1.072e-4250.79Triosephosphate isomerase OS=Oceanobacillus iheyen... [more]
TPIS_BACTN1.828e-4250.00Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_PORGI2.388e-4250.27Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG32.388e-4250.27Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_COLP33.119e-4249.21Triosephosphate isomerase OS=Colwellia psychreryth... [more]
TPIS_CHLCH3.119e-4250.26Triosephosphate isomerase OS=Chlorobium chlorochro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832877 ID=CF832877; Name=CF832877; organism=Citrus sinensis; type=EST; length=812bp
TTTTTTTTTTTTTTTTTGCAGAAGGGAAAAGCAACCATTTATTAAATCCA
CAATGATAAGTTTCAAATCCCCACTGAAATAGGAAAGAGATTCTTAAGAA
TTCTGAAGATTTAACTTATTATACTGGAAAGGCGTTGGTAACACTTAACA
GACCACAAAAATTACAACGCTAGTTTCCAGAACGCATAACAGAGAAAACT
GCAGGCATCAGCAAGCCGAGTAGCTTGGTCTTTAACTTCAATTCTTCTTC
ACTGTGGCAGACTTGATAATATCGATGAACTCCGGCTTTAAAGAAGCTCC
ACCAACCAAAAATCCATCCACATCAGGTTGTGCTGCCAATTCTTTGCAAT
TTGCTCCATTTACAGAACCTCCGTAGATGATTCTAGTTGATGCTGCAACT
TCAGCACTGACATTGTCTTTAAGCCATTTCCTCAGTTCAGCATGGACTTC
CTGAGCCTGAGCAGGGGTTGCAACCTTCCCGGTACCAATGGCCCAAACTG
GCTCATAAGCCAACACAACATTGTCCCAGTTGGATATTTTTTCTGCGATT
GCTTTTGTTTGTTCAGCCACAACAGCCACTGTAGATCCTGATTCTCGCTG
TTCCAGAGTCTCTCCAACACAAGCAATGACTTTCAAGCCTTGAGAAAGTG
CATAAGCAACTTTATCTCCAACAAAATCATTTGACTCATTCAAAAGAGCT
CTTCTTTCAGAATGACCAAGAATGACCCAAGGAATGCTCAAGTTGACAAG
CATCTCAGCACTAACTTCCCCGGTAAAAGCACCACCTTTGCGAACCCAGC
AATTTTGAGCAG
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