CF832878

Overview
NameCF832878
Unique NameCF832878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:144..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.401e-38
Identity = 86/173 (49.71%), Postives = 114/173 (65.90%), Query Frame = 3
Query:  141 VAAQNCWVR-KGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V AQN  V+ + GA TGEV+ E LV      V++GHSERR ++ E+++ +  K A A ++GLK + C+GETLE+RE+G T+ VV  Q  +I E   +  + N V+AYEPVWAIGTG  ATP QAQ+VHA +R  L     AEVAA  +++YGGSV  AN  EL   PD+DG L
Sbjct:   60 VGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQVIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAE-DAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CARHZ (Triosephosphate isomerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.401e-38
Identity = 89/176 (50.57%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQT-KAIAEKISNW-DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            S+  + AQN    K GAFTGEVS  ML ++ + +VILGHSERRA   E+++ +  K+  A + GL  I CVGETLE+RE G T AVV  Q  K +A   +   +N+ +AYEPVWAIGTGK ATP  AQEV   +R+ L      E+A   RI YGGSV   N KEL A+PD+DG L
Sbjct:   57 SNIALGAQNMHFEKEGAFTGEVSPAMLQDIGVKYVILGHSERRAYFGETDELINQKIKAAFTWGLNPIFCVGETLEERERGITKAVVEIQVLKGLAGVTAEQAENLTIAYEPVWAIGTGKTATPDDAQEVCQFIRELLVKLFGREIADKVRIQYGGSVKPENIKELIAKPDIDGAL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_RHOBA (Triosephosphate isomerase OS=Rhodopirellula baltica GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.054e-38
Identity = 86/180 (47.78%), Postives = 117/180 (65.00%), Query Frame = 3
Query:  117 SVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            +V+ +   + AQN +  + GAFTGEV+A ML ++   +VILGHSERR L+ E++  V  K+  AL+  L  I CVGETLEQRE+  T +V+  Q +   E +  +   N+V+AYEPVWAIGTGK A+  QA+ VHA +R+ L    S EVA   RI YGGSV   N +EL +QP++DG L
Sbjct:   54 AVVGTPVELGAQNLYAAEDGAFTGEVNASMLTDVGCRFVILGHSERRQLMGETDACVAKKLHAALAGNLVPIVCVGETLEQREADDTESVIETQIRGSLEGLDEARAANIVIAYEPVWAIGTGKTASKEQAEAVHAFIRELLGKMFSTEVAEQIRIQYGGSVKPGNAEELLSQPNIDGAL 233          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_COREF (Triosephosphate isomerase OS=Corynebacterium efficiens GN=tpiA PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.054e-38
Identity = 86/170 (50.59%), Postives = 109/170 (64.12%), Query Frame = 3
Query:  147 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            AQ+    + GA+TGEVSA ML  L+  WV++GHSERR   NE+++ V  K   ALS+G+  I CVGE LE RE+G+ V  V EQT+A    +S     N V+AYEPVWAIGTGKVA+ A AQEV   +R  + +    EVA   RI+YGGSV      E+ +QPDVDG L
Sbjct:   71 AQDVSQHESGAYTGEVSASMLAKLNCSWVVVGHSERREYHNETDELVAAKAKAALSKGISPIVCVGEPLEIREAGTHVDYVVEQTRASLAGLSADELANTVIAYEPVWAIGTGKVASAADAQEVCKAIRGLVTELAGEEVAEGMRILYGGSVKAETIAEIVSQPDVDGGL 240          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_THIDA (Triosephosphate isomerase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.213e-38
Identity = 93/170 (54.71%), Postives = 110/170 (64.71%), Query Frame = 3
Query:  147 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            AQN      GAFTGEVSA ML++    +VI+GHSERR+L  ES+  V  K   A + GL  I CVGE+L +RESG T  VVA Q  A+  A  I++    V+AYEPVWAIGTGK A+P QAQ VHA +R  L D + A VAA   I YGGSV  AN  EL AQPD+DG L
Sbjct:   60 AQNVSEHGKGAFTGEVSASMLLDFGCKYVIVGHSERRSLYGESDALVAAKYMAAQAAGLTPILCVGESLAERESGVTEQVVARQLDAVVAAAGIASLARAVVAYEPVWAIGTGKTASPEQAQAVHAFIRGKLAD-LDAAVAAGLIIQYGGSVKAANAAELMAQPDIDGGL 228          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PARD8 (Triosephosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.213e-38
Identity = 85/172 (49.42%), Postives = 111/172 (64.53%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            VAA+NC  ++ GA+TGEVSA M+ +    +VILGHSERRA  +E+ + +  KV  AL+ GL  I C+GE LE+RE+G    VV  Q       +S  D   ++LAYEPVWAIGTGK A+  QA+E+HA +R  L      EVA +  I+YGGS N  N KEL A+P+VDG L
Sbjct:   62 VAAENCADKEKGAYTGEVSAAMVASTGAKYVILGHSERRAYYHETPEILKTKVELALANGLTPIFCIGEVLEEREAGKHFEVVDAQIAGSLFDLSAEDFGKIILAYEPVWAIGTGKTASAEQAEEIHAHIRATLAAKYGNEVADNCTILYGGSCNAGNAKELFAKPNVDGGL 233          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.213e-38
Identity = 85/179 (47.49%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            S  H+ AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  + ++ VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A++A    I YGGSVN  N  EL  QPD+DG L
Sbjct:   57 SHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGAL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_SHESH (Triosephosphate isomerase OS=Shewanella sediminis (strain HAW-EB3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.203e-37
Identity = 85/172 (49.42%), Postives = 112/172 (65.12%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E++D V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSDIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPYIGENIRILYGGSVTPSNAADLFAQPDVDGGL 239          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_SHELP (Triosephosphate isomerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.203e-37
Identity = 85/172 (49.42%), Postives = 112/172 (65.12%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E++D V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSDIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPYIGENIRILYGGSVTPSNAADLFAQPDVDGGL 239          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_RUTMC (Triosephosphate isomerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.203e-37
Identity = 82/179 (45.81%), Postives = 117/179 (65.36%), Query Frame = 3
Query:  120 VLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V+ S  ++ AQN  V K GAFTGE+SA+M+ +    +VI+GHSERR+L  E+++ V  KV  AL   L  + C+GE LE RES +T +VV++Q + + ++  I  + N+++AYEPVWAIGT   ATP QAQ+ HA +R  L +   A++A  T I+YGGS+N  N  EL    D+DG L
Sbjct:   53 VVDSQLNLGAQNLNVNKLGAFTGEISADMIKDFGAKYVIVGHSERRSLYGETDEIVAQKVQVALDNNLTPLFCIGELLEDRESNNTKSVVSKQIQVVIDRVGIEAFKNIIVAYEPVWAIGTNVTATPQQAQDTHAFIRSMLAE-YDADIAQITSILYGGSMNSRNAAELLNCKDIDGGL 230          
The following BLAST results are available for this feature:
BLAST of CF832878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PSEPG5.401e-3849.71Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_CARHZ5.401e-3850.57Triosephosphate isomerase OS=Carboxydothermus hydr... [more]
TPIS_RHOBA7.054e-3847.78Triosephosphate isomerase OS=Rhodopirellula baltic... [more]
TPIS_COREF7.054e-3850.59Triosephosphate isomerase OS=Corynebacterium effic... [more]
TPIS_THIDA9.213e-3854.71Triosephosphate isomerase OS=Thiobacillus denitrif... [more]
TPIS_PARD89.213e-3849.42Triosephosphate isomerase OS=Parabacteroides dista... [more]
TPIS_KLEPN9.213e-3847.49Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_SHESH1.203e-3749.42Triosephosphate isomerase OS=Shewanella sediminis ... [more]
TPIS_SHELP1.203e-3749.42Triosephosphate isomerase OS=Shewanella loihica (s... [more]
TPIS_RUTMC1.203e-3745.81Triosephosphate isomerase OS=Ruthia magnifica subs... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832878 ID=CF832878; Name=CF832878; organism=Citrus sinensis; type=EST; length=650bp
GGACATCTGAGCGATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAG
GCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAG
TGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATG
GAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTG
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