CF832878

Overview
NameCF832878
Unique NameCF832878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:144..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CORDI (Triosephosphate isomerase OS=Corynebacterium diphtheriae GN=tpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.203e-37
Identity = 85/170 (50.00%), Postives = 108/170 (63.53%), Query Frame = 3
Query:  147 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            AQ+    + GA+TGE+SA+ML  L   WV++GHSERR    ES++ V  K   AL+QG+  I CVGE LE RE+G+ V  V EQT+A    ++  D    V+AYEPVWAIGTGKVA+ A AQEV A +R  + +    EVA   RI+YGGSV      E+  QPDVDG L
Sbjct:   68 AQDVSQHEAGAYTGEISAQMLAKLGCTWVVVGHSERREYHGESSELVAVKAKAALNQGISPIVCVGEPLEIREAGTHVEYVVEQTRASLAGLTADDLAKTVIAYEPVWAIGTGKVASAADAQEVCAAIRNLIIELAGKEVAEGLRILYGGSVKAETVAEIVGQPDVDGGL 237          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_SHEWM (Triosephosphate isomerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 85/172 (49.42%), Postives = 112/172 (65.12%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E++D V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDSGCRYVIIGHSERRRMYGETSDIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGL 239          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPK (Triosephosphate isomerase OS=Pseudomonas putida (strain KT2440) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 85/173 (49.13%), Postives = 114/173 (65.90%), Query Frame = 3
Query:  141 VAAQNCWVR-KGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V AQN  V+ + GA TGEV+ E LV      V++GHSERR ++ E+++ +  K A A ++GLK + C+GETLE+RE+G T+ VV  Q  +I E   +  + + V+AYEPVWAIGTG  ATP QAQ+VHA +R  L     AEVAA  +++YGGSV  AN  EL   PD+DG L
Sbjct:   60 VGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAE-DAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PSEP1 (Triosephosphate isomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 85/173 (49.13%), Postives = 114/173 (65.90%), Query Frame = 3
Query:  141 VAAQNCWVR-KGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V AQN  V+ + GA TGEV+ E LV      V++GHSERR ++ E+++ +  K A A ++GLK + C+GETLE+RE+G T+ VV  Q  +I E   +  + + V+AYEPVWAIGTG  ATP QAQ+VHA +R  L     AEVAA  +++YGGSV  AN  EL   PD+DG L
Sbjct:   60 VGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFADAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAE-DAEVAAKVQLLYGGSVKAANAAELFGMPDIDGGL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PROVI (Triosephosphate isomerase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 83/179 (46.37%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            +++  S+  + AQNC     GAFTGEVS  ML  L   +VI+GHSERR    E++  V  ++   L+ G+K I CVGETLE+RESG+  AVV+ Q     + + +  ++V+AYEPVWAIGTG+ A+  QAQEVH  +R  + +   A  A + RI YGGSV  +N  EL A PD+DG L
Sbjct:   53 RTIKGSEVLLVAQNCHYEDDGAFTGEVSTGMLNALGCSYVIIGHSERRQYFGETDATVNLRIKKVLAAGMKAILCVGETLEERESGAFEAVVSTQVTGGLQGVVDISDIVIAYEPVWAIGTGRTASSEQAQEVHKIIRNKVAELYGAPAADAVRIQYGGSVKPSNAAELFAMPDIDGGL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PELPB (Triosephosphate isomerase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 83/179 (46.37%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            K +  S+  + AQNC     GAFTGEVSA M++ +    VI+GHSERR    E+N  V  ++  ALS+GL VI CVGETL +RESG    V++ Q +   + I +   +V+AYEPVWAIGTGK A+ AQA+EVH  +R  +        +   RI YGGSV  +N  EL A P++DG L
Sbjct:   53 KVIAESEVQLVAQNCHYENDGAFTGEVSARMILAVGCSSVIIGHSERRQYFGETNATVNLRIKKALSEGLNVILCVGETLAERESGVMETVISSQVREGLDGIIDISAIVIAYEPVWAIGTGKTASSAQAEEVHLFIRTLVTGLYGQTASEKVRIQYGGSVKPSNAAELFAMPNIDGGL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 86/175 (49.14%), Postives = 112/175 (64.00%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAI--AEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVS---AEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES++ +  K A    QGL  + C+GET  + E+G T  V A Q  A+   +  S ++ VV+AYEPVWAIGTGK ATPAQAQ VH    K+++D+++   A+VA    I YGGSVN AN  EL  QPD+DG L
Sbjct:   61 LGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDELIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGASAFEGVVIAYEPVWAIGTGKSATPAQAQAVH----KFIRDHIAKADAKVAEQVIIQYGGSVNAANAAELFTQPDIDGAL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_SHEPW (Triosephosphate isomerase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 86/180 (47.78%), Postives = 113/180 (62.78%), Query Frame = 3
Query:  144 AAQNCWVRKG---------GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            A   C VR G         GA+TGE+S +ML +    +VI+GHSERR +  E++D V +K A A   GL  I CVGE+   RE+  T  V+AE+   + EK     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L
Sbjct:   61 ALNGCLVRMGTQNVSQHDFGAYTGEISGQMLKDSGCRYVIIGHSERRRMYGETSDIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDVVIEKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGL 239          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CORGB (Triosephosphate isomerase OS=Corynebacterium glutamicum (strain R) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 85/170 (50.00%), Postives = 106/170 (62.35%), Query Frame = 3
Query:  147 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            AQ+    + GA+TGEVSA ML  L+  WV++GHSERR   NES++ V  K   ALS G+  I CVGE LE RE+G+ V  V EQT+     +   +  N V+AYEPVWAIGTGKVA+ A AQEV   +R  + +    EVA   RI+YGGSV      E+  QPDVDG L
Sbjct:   68 AQDVSQHESGAYTGEVSASMLAKLNCSWVVVGHSERREYHNESDELVAAKAKAALSNGISPIVCVGEPLEIREAGTHVEYVVEQTRKSLAGLDATELANTVIAYEPVWAIGTGKVASAADAQEVCKAIRGLIVELAGDEVAEGLRILYGGSVKAETVAEIVGQPDVDGGL 237          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_BACWK (Triosephosphate isomerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 88/176 (50.00%), Postives = 110/176 (62.50%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISNWDNV-VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            +D  V AQN    K GAFTGE+S   L +L + +V+LGHSERR +  E+++ V  K   A   GL  I C GETLE+RESG T  +VA Q TKA+A        V V+AYEP+WAIGTGK ++ A A EV A +RK + + VS E A + RI YGGSV   N KE  AQ D+DG L
Sbjct:   57 TDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKVTVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGAL 232          
The following BLAST results are available for this feature:
BLAST of CF832878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CORDI1.203e-3750.00Triosephosphate isomerase OS=Corynebacterium dipht... [more]
TPIS_SHEWM1.571e-3749.42Triosephosphate isomerase OS=Shewanella woodyi (st... [more]
TPIS_PSEPK1.571e-3749.13Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEP11.571e-3749.13Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PROVI1.571e-3746.37Triosephosphate isomerase OS=Prosthecochloris vibr... [more]
TPIS_PELPB1.571e-3746.37Triosephosphate isomerase OS=Pelodictyon phaeoclat... [more]
TPIS_ENT382.681e-3749.14Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_SHEPW3.501e-3747.78Triosephosphate isomerase OS=Shewanella piezotoler... [more]
TPIS_CORGB3.501e-3750.00Triosephosphate isomerase OS=Corynebacterium gluta... [more]
TPIS_BACWK3.501e-3750.00Triosephosphate isomerase OS=Bacillus weihenstepha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832878 ID=CF832878; Name=CF832878; organism=Citrus sinensis; type=EST; length=650bp
GGACATCTGAGCGATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAG
GCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAG
TGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATG
GAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTG
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