CF832878

Overview
NameCF832878
Unique NameCF832878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_BACCR (Putative triosephosphate isomerase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=tpiA PE=5 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.019e-36
Identity = 87/176 (49.43%), Postives = 109/176 (61.93%), Query Frame = 3 
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISNW-DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            +D  V AQN    K GAFTGE+S   L +L + +V+LGHSERR +  E+++ V  K   A   GL  I C GETLE+RESG T  +VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV A +RK + + VS E A + RI YGGSV   N KE  AQ D+DG L
Sbjct:   57 TDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGAL 232
[Close]
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_BACCE (Triosephosphate isomerase OS=Bacillus cereus GN=tpiA PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.019e-36
Identity = 87/176 (49.43%), Postives = 109/176 (61.93%), Query Frame = 3 
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISNW-DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            +D  V AQN    K GAFTGE+S   L +L + +V+LGHSERR +  E+++ V  K   A   GL  I C GETLE+RESG T  +VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV A +RK + + VS E A + RI YGGSV   N KE  AQ D+DG L
Sbjct:   57 TDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGAL 232
[Close]
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_BACC4 (Triosephosphate isomerase OS=Bacillus cereus (strain B4264) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.019e-36
Identity = 87/176 (49.43%), Postives = 109/176 (61.93%), Query Frame = 3 
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISNW-DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            +D  V AQN    K GAFTGE+S   L +L + +V+LGHSERR +  E+++ V  K   A   GL  I C GETLE+RESG T  +VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV A +RK + + VS E A + RI YGGSV   N KE  AQ D+DG L
Sbjct:   57 TDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGAL 232
[Close]
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_BACC2 (Triosephosphate isomerase OS=Bacillus cereus (strain G9842) GN=tpiA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.019e-36
Identity = 87/176 (49.43%), Postives = 109/176 (61.93%), Query Frame = 3 
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISNW-DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            +D  V AQN    K GAFTGE+S   L +L + +V+LGHSERR +  E+++ V  K   A   GL  I C GETLE+RESG T  +VA Q TKA+A          V+AYEP+WAIGTGK ++ A A EV A +RK + + VS E A + RI YGGSV   N KE  AQ D+DG L
Sbjct:   57 TDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGAL 232
[Close]
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_SHESR (Triosephosphate isomerase OS=Shewanella sp. (strain MR-7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 83/172 (48.26%), Postives = 112/172 (65.12%), Query Frame = 3 
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGL 239
[Close]
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_SHESM (Triosephosphate isomerase OS=Shewanella sp. (strain MR-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 83/172 (48.26%), Postives = 112/172 (65.12%), Query Frame = 3 
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGL 239
[Close]
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_SHESA (Triosephosphate isomerase OS=Shewanella sp. (strain ANA-3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 83/172 (48.26%), Postives = 112/172 (65.12%), Query Frame = 3 
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGL 239
[Close]
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_SHEON (Triosephosphate isomerase OS=Shewanella oneidensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 83/172 (48.26%), Postives = 112/172 (65.12%), Query Frame = 3 
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQN      GA+TGEVS +ML +    +VI+GHSERR +  E+++ V +K A A   GL  I CVGE+   RE+  T  V+AE+   + +K     +DN ++AYEP+WA+GTGK ATP QAQEVHA +RK L + VS  +  + RI+YGGSV  +N  +L AQPDVDG L
Sbjct:   69 MGAQNLSQHDFGAYTGEVSGQMLKDCGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIQKNGTMAFDNAIIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSE-VSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGL 239
[Close]
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIN (Triosephosphate isomerase OS=Leptospira interrogans GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 81/174 (46.55%), Postives = 113/174 (64.94%), Query Frame = 3 
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNV--SAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V AQNC+     AFTGE S + L  + +  V++GHSERR  L ESN F  DK+ + L     V+ CVGETL +RESG T+ V++ Q +   + I +  + N++LAYEPVWAIGTGKVATP+QAQEVH+ +RK +      ++ ++ S  I+YGGSV   N ++L  + D+DG L
Sbjct:   62 VGAQNCYHSGLAAFTGETSPDQLKEIGVKVVMVGHSERRQFLGESNFFCNDKIRFLLKNEFTVLYCVGETLSERESGKTLEVLSSQIREGLKGIDSVFFSNLILAYEPVWAIGTGKVATPSQAQEVHSFIRKEISGLFVGASSISESISILYGGSVKPDNIQDLLKEKDIDGGL 235
[Close]
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIC (Triosephosphate isomerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=tpiA PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.330e-36
Identity = 81/174 (46.55%), Postives = 113/174 (64.94%), Query Frame = 3 
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNV--SAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V AQNC+     AFTGE S + L  + +  V++GHSERR  L ESN F  DK+ + L     V+ CVGETL +RESG T+ V++ Q +   + I +  + N++LAYEPVWAIGTGKVATP+QAQEVH+ +RK +      ++ ++ S  I+YGGSV   N ++L  + D+DG L
Sbjct:   62 VGAQNCYHSGLAAFTGETSPDQLKEIGVKVVMVGHSERRQFLGESNFFCNDKIRFLLKNEFTVLYCVGETLSERESGKTLEVLSSQIREGLKGIDSVFFSNLILAYEPVWAIGTGKVATPSQAQEVHSFIRKEISGLFVGASSISESISILYGGSVKPDNIQDLLKEKDIDGGL 235
The following BLAST results are available for this feature:
BLAST of CF832878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BACCR1.019e-3649.43Putative triosephosphate isomerase OS=Bacillus cer... [more]
TPIS_BACCE1.019e-3649.43Triosephosphate isomerase OS=Bacillus cereus GN=tp... [more]
TPIS_BACC41.019e-3649.43Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACC21.019e-3649.43Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_SHESR1.330e-3648.26Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESM1.330e-3648.26Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHESA1.330e-3648.26Triosephosphate isomerase OS=Shewanella sp. (strai... [more]
TPIS_SHEON1.330e-3648.26Triosephosphate isomerase OS=Shewanella oneidensis... [more]
TPIS_LEPIN1.330e-3646.55Triosephosphate isomerase OS=Leptospira interrogan... [more]
TPIS_LEPIC1.330e-3646.55Triosephosphate isomerase OS=Leptospira interrogan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832878 ID=CF832878; Name=CF832878; organism=Citrus sinensis; type=EST; length=650bp
GGACATCTGAGCGATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAG
GCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAG
TGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATG
GAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTG
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