CF832878

Overview
NameCF832878
Unique NameCF832878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:144..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 3.844e-60
Identity = 112/170 (65.88%), Postives = 133/170 (78.24%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL++GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFL
Sbjct:   62 VAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 3.844e-60
Identity = 112/170 (65.88%), Postives = 133/170 (78.24%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL++GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFL
Sbjct:   62 VAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 231.106 bits (588), Expect = 3.844e-60
Identity = 112/170 (65.88%), Postives = 133/170 (78.24%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            VAAQNC+    GAFTGE+S  M+ +L   WV+LGHSERR +  ES++ +G KVA+AL++GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA S RIIYGGSV GA CKELA+QPDVDGFL
Sbjct:   62 VAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCKELASQPDVDGFL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 6.557e-60
Identity = 111/170 (65.29%), Postives = 134/170 (78.82%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            VAAQNC+    GAFTGE+S  M+ +L   WV+LGHSERR +  ES++ +G KV++AL++GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NV+  VA STRIIYGGSV GA CKELA+QPDVDGFL
Sbjct:   62 VAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDVDGFL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.118e-59
Identity = 113/170 (66.47%), Postives = 133/170 (78.24%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            VAAQNC+    GAFTGE+S  M+ +L   WV+LGHSERR +  ES++ +G KV +ALS+GL VIAC+GE L++RE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA  TRIIYGGSV GA CKELA+QPDVDGFL
Sbjct:   62 VAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHIFGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKCNVSEGVAQCTRIIYGGSVTGATCKELASQPDVDGFL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.118e-59
Identity = 111/170 (65.29%), Postives = 132/170 (77.65%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL++GL VIAC+GE L++RE+G T  VV EQTK I + + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFL
Sbjct:   62 VAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVITDNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.118e-59
Identity = 110/174 (63.22%), Postives = 137/174 (78.74%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPD 635
            +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES + + DK+ +AL++GLKVIAC+GETL++RE+  T AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK ATP QAQEVHA LRKW  +NVSA+V+++ RI YGGSV  ANC+ELAA+PD
Sbjct:   33 RSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.461e-59
Identity = 111/176 (63.07%), Postives = 134/176 (76.14%), Query Frame = 3
Query:  123 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            L + F V+AQNC+    GAFTGE+S  M+ +    WVILGHSERR +  ES++ +G KVA+ALS+ + VI C+GE L+QRE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR+WLK NVS +VA S RIIYGGSV G  CKEL AQPD+DGFL
Sbjct:   55 LDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCKELGAQPDIDGFL 230          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.461e-59
Identity = 112/170 (65.88%), Postives = 134/170 (78.82%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            VAAQNC+    GAFTGE+S  M+ ++   WVILGHSERR +  ES++ +G KVA+AL++GL VIAC+GE L++RE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK +VS  VA STRIIYGGSV G NCKELA+Q DVDGFL
Sbjct:   61 VAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFL 230          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.249e-59
Identity = 107/172 (62.21%), Postives = 135/172 (78.49%), Query Frame = 3
Query:  135 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            F VAAQNC+    GAFTGE+S  M+ +  + WVILGHSERR +  ES++ +G KV++ALS+GL V+AC+GE L++RE+G T  VV E T+ IA+ + +W  VVLAYEPVWAIGTGK A+P Q+QE+H +LRKWLK+NVS  VA S RIIYGGSV GA CKELA++PDVDGFL
Sbjct:   58 FGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFL 229          
The following BLAST results are available for this feature:
BLAST of CF832878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HUMAN3.844e-6065.88Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
TPIS_CANFA3.844e-6065.88Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_BOVIN3.844e-6065.88Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_MOUSE6.557e-6065.29Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_RAT1.118e-5966.47Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_GORGO1.118e-5965.29Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_CULPI1.118e-5963.22Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_XENTR1.461e-5963.07Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_CHICK1.461e-5965.88Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPIS_LATCH7.249e-5962.21Triosephosphate isomerase OS=Latimeria chalumnae P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832878 ID=CF832878; Name=CF832878; organism=Citrus sinensis; type=EST; length=650bp
GGACATCTGAGCGATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAG
GCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAG
TGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATG
GAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTG
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