CF832878

Overview
NameCF832878
Unique NameCF832878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_FRATH (Triosephosphate isomerase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=tpiA PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 72/172 (41.86%), Postives = 104/172 (60.47%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V  QN      GA+TGE+SA ML ++   ++++GHSERR+L  ES++ V  K+   +   +  + C+GE+L+ R+SG    V+A Q   I E +S      VV+AYEPVWAIGTG VA+  Q QE H  +R  L   V   +A + +I+YGGS+   N K++ + PDVDG L
Sbjct:   59 VGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRKSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLA-KVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGL 229          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_FRATF (Triosephosphate isomerase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=tpiA PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.174e-30
Identity = 72/172 (41.86%), Postives = 104/172 (60.47%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V  QN      GA+TGE+SA ML ++   ++++GHSERR+L  ES++ V  K+   +   +  + C+GE+L+ R+SG    V+A Q   I E +S      VV+AYEPVWAIGTG VA+  Q QE H  +R  L   V   +A + +I+YGGS+   N K++ + PDVDG L
Sbjct:   59 VGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGESLDDRKSGKLKQVLATQLSLILENLSVEQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLA-KVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGL 229          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_POLSQ (Triosephosphate isomerase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 72/171 (42.11%), Postives = 101/171 (59.06%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQ+      GA+TGEV A ML  +   +VI+GHSERR +  E+++ V  K   AL  G+  + CVGET ++R SG    +V  Q  K ++       + ++AYEPVWAIGTGKVA+   AQ++H  +R  L +    +VA+   I+YGGSV   N  EL A PD+DG L
Sbjct:   66 LGAQDVSAHGAGAYTGEVGASMLKEMGCEYVIVGHSERRQMHQEADESVAAKALQALDSGMTPVICVGETADERNSGRAEEIVCSQVAKQVSVLQDRLADCLIAYEPVWAIGTGKVASAQVAQDMHRAIRMQLAE-FDEDVASHVGILYGGSVKPDNAVELFAMPDIDGGL 235          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_MYCLE (Triosephosphate isomerase OS=Mycobacterium leprae GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 73/161 (45.34%), Postives = 96/161 (59.63%), Query Frame = 3
Query:  174 GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            GA+TG++S   L  L   +V++GHSERR   +E +  V  K A AL   L  I C+GE LE RE G  V+    Q +     +S     NVV+ YEPVWAIGTG+VA+ A AQEV   +RK L    S +VA + R++YGGS+N  N  ++ AQ DVDG L
Sbjct:   77 GAYTGDISGAFLAKLGCSFVLVGHSERRTYHDEGDALVAAKTAAALKNSLTPIVCIGEYLEIREVGEHVSHCQNQLRGSLAGLSPEQIGNVVIVYEPVWAIGTGRVASAADAQEVCEAIRKELGALASPQVAETVRVLYGGSLNAKNIGDIVAQQDVDGGL 237          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_BUCAP (Triosephosphate isomerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 72/183 (39.34%), Postives = 105/183 (57.38%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK--DNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            K +   + H+AAQN  V   GAFTGE SA M+ ++ + ++I+GHSERR L NE+N+ +  K     +  L  I C+GET  +++S  T  ++ EQ  +I        + N V+AYEP+W+IGTG  A P   Q +H  ++ ++K  D VSAE   +  + YGGSV   N      QPD+DG L
Sbjct:   53 KDINSINIHLAAQNIDVNLTGAFTGENSALMMKDIGVKYIIIGHSERRLLHNENNEIIAKKFCLVKNLNLVPILCIGETEAEKKSNKTEKILKEQLNSIFNSFGEKAFRNAVIAYEPIWSIGTGVSADPKNVQLIHKFIKNYIKKYDIVSAE---NLIVQYGGSVTSLNAGNFLKQPDIDGLL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_BRASO (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain ORS278) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 74/170 (43.53%), Postives = 101/170 (59.41%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V AQ+C  +  GA TG++SAEML +     VI+GHSERRA   ES+  V  K   A   GL  I CVGET +QR++G T+ ++  Q      + S  DN+++AYEPVWAIGTG   T    +++H+ +R+ L      E  A  RI+YGGSV  +N  EL A  +V+G L
Sbjct:   65 VGAQDCHAKASGAHTGDISAEMLADAGASAVIVGHSERRADHGESDVVVHQKAEAAWRAGLVAIVCVGETQQQRDAGLTLEILRGQLTLSLPEGSRADNLIVAYEPVWAIGTGLTPTAGDVEQIHSFIRQLLIVRFK-EQGARMRILYGGSVKPSNAAELMAVANVNGAL 233          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_ANOFW (Triosephosphate isomerase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 74/172 (43.02%), Postives = 98/172 (56.98%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQN      GAFTGE+S   L +L + +VI+GHSERR +  E+++ V  KV  A   GL  I C GETLE+RES  T  VV  Q +   E ++      VV+AYEP+WAIGTGK +T   A  V   +R+ + +  S E A + RI YGGSV   N     A+  +DG L
Sbjct:   61 IGAQNMHFEDQGAFTGEISPVALKDLGVEYVIIGHSERREMFAETDETVNKKVLAAFKHGLVPIVCCGETLEERESNRTNEVVRVQVEKALEGLTEEQVKQVVIAYEPIWAIGTGKSSTAEDANNVCGYIRQVIANKFSQEAANAVRIQYGGSVKPENIAAFLAEEHIDGAL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_ACIF2 (Triosephosphate isomerase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30
Identity = 73/170 (42.94%), Postives = 104/170 (61.18%), Query Frame = 3
Query:  150 QNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI---SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            QN +    GA+TGE+S  ML ++   +V++GHSERR +  ES+  +  K+  AL  GL  + CVGET  +R  G T AV+  Q +A+   +   ++  N+++AYEPVWAIGTG  A+P QAQ VH  +R+ L    SA++A    ++YGGSV G N   L  Q D+DG L
Sbjct:   64 QNLFWEASGAYTGEISGAMLRDMGCRYVLIGHSERRQIFAESDAQIVQKIKAALLSGLIPVVCVGETEAERAQGLTDAVLRRQLEAVLPLLNLEASQPNLIIAYEPVWAIGTGLSASPEQAQAVHVFIRE-LAAAYSAQLARRLLLLYGGSVKGNNAAALFDQADIDGAL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 74/174 (42.53%), Postives = 101/174 (58.05%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            SD  V AQN      GAFTGE+S  ML  L + +VI+GHSERR    E+++ V  ++A A   GL  I CVGE+ +QRE G T + +  Q     + I + +N+V+AYEP+WAIGTG+     +A  V   +R+ L +       A   I+YGGSV   N  EL AQP++DG L
Sbjct:   62 SDIAVGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESQQQREQGLTESWIVGQLDRALQGI-DLENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGN-------AQLPILYGGSVKAGNIDELMAQPEIDGVL 227          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_SULNB (Triosephosphate isomerase OS=Sulfurovum sp. (strain NBC37-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.071e-30
Identity = 69/173 (39.88%), Postives = 100/173 (57.80%), Query Frame = 3
Query:  132 DFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            DF + AQN ++ K GAFTGE+  + L   +I  +++GHSERR +L E   FV +K +Y  SQG ++I C+GE LE RE+G    +V   ++     +S ++ +++AYEP+WAIGTG  AT       HA L++               ++YGGSV  AN KE+ A   VDG L
Sbjct:   51 DFTIGAQNAYLEKNGAFTGEIGLDQLDEFAIKTILIGHSERRDILGEDQAFVAEKFSYFKSQGFEIIYCIGEALEVREAGEEAVMVHLLSQFEGIDLS-YEKMIVAYEPIWAIGTGHSATTEAIASTHAALKQHF----------DRPLLYGGSVKPANIKEITAIESVDGVL 212          
The following BLAST results are available for this feature:
BLAST of CF832878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_FRATH3.174e-3041.86Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_FRATF3.174e-3041.86Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_POLSQ5.414e-3042.11Triosephosphate isomerase OS=Polynucleobacter sp. ... [more]
TPIS_MYCLE5.414e-3045.34Triosephosphate isomerase OS=Mycobacterium leprae ... [more]
TPIS_BUCAP5.414e-3039.34Triosephosphate isomerase OS=Buchnera aphidicola s... [more]
TPIS_BRASO5.414e-3043.53Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_ANOFW5.414e-3043.02Triosephosphate isomerase OS=Anoxybacillus flavith... [more]
TPIS_ACIF25.414e-3042.94Triosephosphate isomerase OS=Acidithiobacillus fer... [more]
TPIS_SYNJB7.071e-3042.53Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_SULNB7.071e-3039.88Triosephosphate isomerase OS=Sulfurovum sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832878 ID=CF832878; Name=CF832878; organism=Citrus sinensis; type=EST; length=650bp
GGACATCTGAGCGATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAG
GCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAG
TGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATG
GAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTG
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