CF832878

Overview
NameCF832878
Unique NameCF832878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:144..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.464e-51
Identity = 101/178 (56.74%), Postives = 127/178 (71.35%), Query Frame = 3
Query:  123 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            LR+  +V +    + K GAFTGEVS  +L ++ + WVILGHSERR    E+++ V  KV+ A  QG  VIAC+GETL+QRE+  T  VV  QT AIA K++   W+ VVLAYEPVWAIGTGKVATP QAQEVH  LRKW+ +N+  +VAA  RI+YGGSVN AN   L A+PD++GFL
Sbjct:   56 LRNPKYVISAENAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFL 233          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.464e-51
Identity = 98/172 (56.98%), Postives = 130/172 (75.58%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            VAAQN + ++ GAFTGE+S + + +  IP+VILGHSERR L +E+++ V  K   AL  GLKVI C+GETL++RE G T AV  EQ  A+ +++   +W N+V+AYEPVWAIGTGKVAT +QAQE H ++RK+L   VS +VA+ TR+IYGGSVN AN K+LA+Q D+DGFL
Sbjct:   61 VAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGFL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.912e-51
Identity = 97/173 (56.07%), Postives = 123/173 (71.10%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            +AA+NC+    GAFTGE+S EM+ +    WVILGHSERR +  ESN+ +G+KV +AL  GL VI C+GE L +RE+G T  V   Q  AIA+ + +   WD VV+AYEPVWAIGTGK ATPAQAQEVH  +R W++ +V A +A   RI+YGGSV  +N K+L  QPDVDGFL
Sbjct:   60 IAAENCYKVGSGAFTGEISTEMIKDCGCEWVILGHSERRHIFGESNELIGEKVKHALDSGLNVIPCIGELLSEREAGKTNDVCFAQMDAIAKNVPSKEAWDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDWIRKHVDAGIADKVRILYGGSVTASNAKDLGTQPDVDGFL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.262e-51
Identity = 100/174 (57.47%), Postives = 126/174 (72.41%), Query Frame = 3
Query:  135 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            F +AAQN  + K GAFTGEVS  +L +  + W++LGHSERRA   E+N+ V DKVA A++ G  VIAC+GETL++RESG T  VV  Q  AIA+K+  ++W  VV+AYEPVWAIGTGKVATP QAQE HA +R W+   + A+VA   RI+YGGSVNG N + L  Q DV+GFL
Sbjct:   60 FVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.049e-49
Identity = 97/179 (54.19%), Postives = 127/179 (70.95%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            KS L++   VAAQNC+    GAFTGE+S  M+ +L + WVILGHSERR +  ES+  + +K  +AL  G+KV+ C+GE LE+RE+G T  V   Q +AI +K  +W+N+V+AYEPVWAIGTGK A+  QAQEVH  +R +LK+ VS  VA +TRIIYGGSV   N  EL  +PD+DGFL
Sbjct:   51 KSKLKAGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFL 229          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.337e-49
Identity = 97/216 (44.91%), Postives = 133/216 (61.57%), Query Frame = 3
Query:    3 TSERLKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            T E + KIV  LN+AE                     ++  ++   V+AQNC+ +  GA+TGE+S E + +L   W + GHSERR ++ ES+DF+  K  +AL QGL VI C+GETLE+R++  T+ V A Q  A+A  +S+W  +V+AYEPVWAIGTG  ATP  AQE H  +R+ L  ++ A+ A  TRI+YGGSVNG N  E   + DVDGFL
Sbjct:   16 TRESVSKIVDGLNKAELPSNVEVVIAPPAPYIALAVNENKQKT-IEVSAQNCFDKASGAYTGEISPEQIKDLGATWTLTGHSERRTIIKESDDFIASKTKFALDQGLSVILCIGETLEERKANVTLDVCARQLDAVARVVSDWSKIVVAYEPVWAIGTGLAATPEDAQETHKAIREHLSKSIGADAAEKTRILYGGSVNGKNAPEFKDKADVDGFL 230          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.979e-48
Identity = 95/174 (54.60%), Postives = 122/174 (70.11%), Query Frame = 3
Query:  135 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISN--WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            F +AAQN  + + GAFTGEVS ++L +  I WV+LGHSERR    E+N+ V +KVA A + G  VI CVGET E+RE+G T AVV  Q  A+A+K+S   W  VV+AYEPVWAIGTGKVATP QAQEVH  LR+W++  +  ++AA  RI+YGGSV   N + L    D++GFL
Sbjct:   61 FQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFL 233          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.375e-48
Identity = 88/177 (49.72%), Postives = 122/177 (68.93%), Query Frame = 3
Query:  120 VLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V +S   V AQN +++  GAFTGE S + + ++   WVILGHSERR    E +  + +K A+ALSQG+ VI C+GETL+Q+++G+T+ VV  Q +A+ +K+ +W NVV+AYEPVWAIGTG  ATP  AQE+H  +R++L   +  + A  TRI+YGGS NG N      +PDVDGFL
Sbjct:   54 VKKSQVSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFALSQGVGVILCIGETLDQKKAGTTLQVVERQLQAVIDKVKDWSNVVIAYEPVWAIGTGLAATPEDAQEIHHSIREFLAKKLGEKTAQETRILYGGSANGKNAVTFKDKPDVDGFL 230          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.757e-48
Identity = 92/173 (53.18%), Postives = 121/173 (69.94%), Query Frame = 3
Query:  135 FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI-SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            F V +QNC+    GAFTGE+SA MLV+L IP+VI+GHSERR + +ES++ +  K  YA+S GL VI C+GE L  R+S +T  +++EQ K  A      W  +V+AYEPVWAIGTG VATP +AQ+ H  +RKW+ + VS +VA  T I+YGGSVN  NC  L+ Q D+DGFL
Sbjct:   62 FKVCSQNCYSVAKGAFTGEISANMLVDLGIPYVIIGHSERRNVFSESSELITKKTKYAISLGLTVILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKIVIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGFL 234          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 8.313e-47
Identity = 85/170 (50.00%), Postives = 119/170 (70.00%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V AQN +++  GAFTGE S + + ++   WVILGHSERR+  +E + F+ DK  +AL QG+ VI C+GETLE++++G T+ VV  Q  A+ E++ +W NVV+AYEPVWAIGTG  ATP  AQ++HA +RK+L   +  + A+  RI+YGGS NG+N      + DVDGFL
Sbjct:   61 VGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFL 230          
The following BLAST results are available for this feature:
BLAST of CF832878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_LEIME1.464e-5156.74Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPIS_COPC71.464e-5156.98Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_TAESO1.912e-5156.07Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_TRYBB3.262e-5157.47Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_CAEEL1.049e-4954.19Triosephosphate isomerase OS=Caenorhabditis elegan... [more]
TPIS_DEBHA2.337e-4944.91Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPIS_TRYCR1.979e-4854.60Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_ZYGBA3.375e-4849.72Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_DICDI5.757e-4853.18Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_YEAST8.313e-4750.00Triosephosphate isomerase OS=Saccharomyces cerevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832878 ID=CF832878; Name=CF832878; organism=Citrus sinensis; type=EST; length=650bp
GGACATCTGAGCGATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAG
GCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAG
TGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATG
GAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTG
back to top