CF832878

Overview
NameCF832878
Unique NameCF832878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:144..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.537e-40
Identity = 89/170 (52.35%), Postives = 106/170 (62.35%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQNC     GAFTGEVSA M+       VI GHSERR    E+N  V  KV +ALS+GL+VI C GETLEQRE G T  VV  Q +     I +  N+V+AYEPVWAIGTGK AT  QA+EVH  +R  + D    E A   RI YGGSV  +N KEL + P++DG L
Sbjct:   61 LVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAKELFSMPNIDGGL 230          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.843e-40
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            VAA+NC  ++ GA+TGEVSA M+ +    +VI+GHSERRA  +E++  + +KV  ALS GL  I CVGE LE+RE+G    VVA Q +     +   D   ++LAYEPVWAIGTGK AT  QAQE+HA +RK +      EVA    I+YGGS N AN KEL ++ DVDG L
Sbjct:   62 VAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGL 233          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.843e-40
Identity = 88/172 (51.16%), Postives = 113/172 (65.70%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            VAA+NC  ++ GA+TGEVSA M+ +    +VI+GHSERRA  +E++  + +KV  ALS GL  I CVGE LE+RE+G    VVA Q +     +   D   ++LAYEPVWAIGTGK AT  QAQE+HA +RK +      EVA    I+YGGS N AN KEL ++ DVDG L
Sbjct:   62 VAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGL 233          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.843e-40
Identity = 84/171 (49.12%), Postives = 113/171 (66.08%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V A+NC  +  GA+TGEVSAEM+ +    +VILGHSERRA   E+   + +KV  AL+ GL  I C+GE LE+RE+     VVA Q +++      ++  ++LAYEPVWAIGTGK A+P QAQE+HA +R  + D    E+A +T I+YGGS   +N KEL + PDVDG L
Sbjct:   62 VGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAKELFSNPDVDGGL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.193e-39
Identity = 84/177 (47.46%), Postives = 112/177 (63.28%), Query Frame = 3
Query:  126 RSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            +SD  VAAQNC+    GAFTGEVS  +L +    +VI+GHSERR L  ES+ F+  KV   +  GL  I C+GETLE+RE+  T  V+  Q +   E +  +  + +V+AYEPVWAIGTGK AT +QAQ+ H+ +R  + D   ++VA   RI+YGGSV   N   L  QPD+DG L
Sbjct:   56 KSDISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKVKAVIDAGLSAILCIGETLEEREADKTFDVLERQVRCGLEGLDAAAMEQIVVAYEPVWAIGTGKTATDSQAQQAHSFIRSLVNDIFGSKVAQQVRIVYGGSVKPGNVDGLLQQPDIDGAL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPB (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.193e-39
Identity = 86/174 (49.43%), Postives = 108/174 (62.07%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            SD  + AQNC     GA+TGEVS  ML +L   ++I+GHSERR    E+N  V  ++  AL  G++VI C+GETLE+RE+G T A+V  Q +     I +  NVVLAYEPVWAIGTGK ATP QA  VHA +R  + D      A   RI YGGSV  +N  EL   P++DG L
Sbjct:   58 SDICLVAQNCHYEDEGAYTGEVSVRMLDSLGCSYIIVGHSERRQYFGETNRTVNLRLKKALEGGMRVILCIGETLEEREAGVTDAIVTAQVREGLADIEDLGNVVLAYEPVWAIGTGKTATPEQADAVHASIRATISDMYGEADAEDIRIQYGGSVKPSNAVELFGMPNIDGGL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CHLAA (Triosephosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=tpiA PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.864e-39
Identity = 87/179 (48.60%), Postives = 113/179 (63.13%), Query Frame = 3
Query:  120 VLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V  S   + AQN +    GAFTGEVS  MLV++   +VI+GHSERR    ES+ FV  K+  AL+ GL+ I CVGE+  QR++G    +V  Q +A   ++      NVV+AYEP+WAIGTG  ATPA AQ +HA +R  L +   +E+AA+ RI YGGSV   N  EL AQPD+DG L
Sbjct:   54 VADSPLGLGAQNLYPEAQGAFTGEVSPPMLVDIGCRYVIIGHSERRQYFGESDAFVNRKLRAALAHGLRPIVCVGESKPQRDAGQAEPIVTAQVRAALLEVPPDQMANVVIAYEPIWAIGTGDTATPADAQAMHAAIRATLAELYGSEIAATVRIQYGGSVKPDNIDELMAQPDIDGAL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PELPD (Triosephosphate isomerase OS=Pelobacter propionicus (strain DSM 2379) GN=tpiA PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.740e-39
Identity = 89/176 (50.57%), Postives = 117/176 (66.48%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISN-WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            SD  +AAQ+C+  + GAFTGEVS   L +     VI+GHSERR L  E+++ V  K   A++ GL  I CVGET+E+RES +T  VV  Q T A+A  +S+ +  +V+AYEPVWAIGTGK AT  QAQEVH  +R  +  ++S  +A S RI+YGGSV   N + L AQPD+DG L
Sbjct:   57 SDIGLAAQDCFWEEQGAFTGEVSPAQLRDAGCSHVIIGHSERRQLFGETDEGVNRKARAAVAVGLTAIICVGETMEERESRATFTVVGRQVTAALAGFLSHEFSRIVIAYEPVWAIGTGKTATDQQAQEVHCYIRNLVTMSISQAIADSLRILYGGSVKPDNIRGLMAQPDIDGAL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.885e-39
Identity = 85/178 (47.75%), Postives = 113/178 (63.48%), Query Frame = 3
Query:  117 SVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            +V  S   + +QNC   + GA+TGEVSA+M  ++   WVILGHSERRAL  E+++ +  KV  A+  GL  I CVGETL  RESG    V  +Q  A+   +   D+ V+AYEPVWAIGTGK A+P  AQ +H  LR  ++ +   ++A   RI+YGGSV  +N KEL + PDVDG L
Sbjct:   52 AVSDSMIELGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGETLADRESGRAEEVTLKQLDAVFMSVQPDDSWVVAYEPVWAIGTGKTASPEDAQSMHKALRNNIRKHF-PQIADKIRILYGGSVKSSNAKELFSMPDVDGAL 228          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.885e-39
Identity = 82/172 (47.67%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V+AQN    +GGAFTGE+SA+ML ++ +  VILGHSERRA+ +E++  + +KV  AL   + VI C GE L+ R+SG+   +V  Q +     I+  +W  +VLAYEPVWAIGTG+ A+P QAQE+H  +R+ ++    AE+A    I+YGGSV   N KE+ ++PDVDG L
Sbjct:   61 VSAQNVHQAEGGAFTGEISADMLTSIGVNTVILGHSERRAIFHETDALIANKVDTALKHDMTVIFCFGEELKDRQSGNHFNIVENQLRDGVFHIAKESWSKIVLAYEPVWAIGTGETASPEQAQEMHEFIRETIRKAFGAEIADEVSILYGGSVKPENAKEIFSKPDVDGGL 232          
The following BLAST results are available for this feature:
BLAST of CF832878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLPD7.537e-4052.35Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_PORGI9.843e-4051.16Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG39.843e-4051.16Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_BACTN9.843e-4049.12Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_PELCD2.193e-3947.46Triosephosphate isomerase OS=Pelobacter carbinolic... [more]
TPIS_CHLPB2.193e-3949.43Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_CHLAA2.864e-3948.60Triosephosphate isomerase OS=Chloroflexus aurantia... [more]
TPIS_PELPD3.740e-3950.57Triosephosphate isomerase OS=Pelobacter propionicu... [more]
TPIS_HAHCH4.885e-3947.75Triosephosphate isomerase OS=Hahella chejuensis (s... [more]
TPIS_FLAJ14.885e-3947.67Triosephosphate isomerase OS=Flavobacterium johnso... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832878 ID=CF832878; Name=CF832878; organism=Citrus sinensis; type=EST; length=650bp
GGACATCTGAGCGATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAG
GCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAG
TGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATG
GAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTG
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