CF832878

Overview
NameCF832878
Unique NameCF832878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:144..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_OCEIH (Triosephosphate isomerase OS=Oceanobacillus iheyensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.333e-39
Identity = 89/176 (50.57%), Postives = 109/176 (61.93%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            S+  VAAQN      GAFTGEVS  ML +L +  V+LGHSERR L  E+N+ V  K   A +  L  I CVGETL+QRE+  T+ +V EQ K     ++N      ++AYEPVWAIGTGK AT  QA EV  E+RK + +  SA+VA    I YGGSV  AN  EL AQ D+DG L
Sbjct:   57 SEVKVAAQNMHFEDSGAFTGEVSPVMLKDLGVTHVVLGHSERRELFAETNELVNKKTKAAFAHDLTPIVCVGETLDQREANETMNIVGEQVKQAVAGLTNEQVAETIIAYEPVWAIGTGKTATSEQANEVCTEIRKVVAEVTSADVAEKVIIQYGGSVKPANVDELLAQSDIDGAL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.333e-39
Identity = 88/179 (49.16%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            K +  S   + AQNC     GA+TGEVSA ML       VI+GHSERR    E+N  V  +V  AL++GL VI CVGETL +RESG T  +V+ Q +     +S+  NVV+AYEPVWAIGTGK AT AQA+EVH  +R  + +      A + RI YGGSV  +N  EL A P++DG L
Sbjct:   53 KVIAGSTIQLVAQNCHYENDGAYTGEVSAAMLKGAGCSSVIIGHSERRQFFGETNATVNLRVKKALAEGLDVILCVGETLAERESGVTGDIVSAQVREGLVGVSDISNVVIAYEPVWAIGTGKTATSAQAEEVHLMIRTLVTELYGEPAAQALRIQYGGSVKPSNAVELFAMPNIDGGL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.088e-38
Identity = 85/178 (47.75%), Postives = 118/178 (66.29%), Query Frame = 3
Query:  123 LRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            L    HV +QN    + GA+TGEVS  ML NL+I +VI+GHSERR++  E++  V  KV  AL+ GL  I C+GE+  +R +G T  V++ Q + + ++  I  + +VV+AYEPVWAIGTGK A+ A AQE H  +RK+L    + +VA    ++YGGSVN ANC+EL AQ D+DG L
Sbjct:   59 LNEAIHVGSQNVSEHESGAYTGEVSTAMLQNLAINYVIVGHSERRSIFKETSTQVAKKVHAALNAGLTPILCIGESEAERATGETETVLSAQIQPVIDEIGIEKFKDVVIAYEPVWAIGTGKTASSAMAQETHQFIRKFLAQQ-NEQVADKVPLLYGGSVNAANCEELFAQTDIDGGL 235          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.421e-38
Identity = 85/173 (49.13%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  141 VAAQNCWVRKG-GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            V AQ+C ++ G GA TGEVSA+ LV+L   WV++GHSERR +L E+++ V  K A A + GLK + C+GETLE+RE+G T+ VVA Q   + +   +  + + V+AYEPVWAIG+G  ATP QAQEVHA +R  L  +    +A   R++YGGSV   N  EL A  D+DG L
Sbjct:   60 VGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRDQLARS-DRRIAEGVRLLYGGSVKADNAAELFAMADIDGGL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_FUSNN (Triosephosphate isomerase OS=Fusobacterium nucleatum subsp. nucleatum GN=tpiA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.856e-38
Identity = 85/181 (46.96%), Postives = 114/181 (62.98%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            K V  S+  +AA+N + +  GA+TGEVS +ML ++ + +VILGHSERR    ES++F+  KV   L  G+K I C+GE LE RE G T+ V+A+Q K     +S  D    ++AYEPVWAIGTGK ATP  AQE H E+R  L +    +VA    I YGGS+   N K+L +Q D+DG L
Sbjct:   52 KIVEGSNVKIAAENVYPKIEGAYTGEVSPKMLKDIGVTYVILGHSERREYFKESDEFINQKVKAVLEIGMKPILCIGEKLEDREGGKTLEVLAKQIKEGLVDLSKEDAEKTIVAYEPVWAIGTGKTATPEMAQETHKEIRNVLAEMFGKDVADKMIIQYGGSMKPENAKDLLSQEDIDGGL 232          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.424e-38
Identity = 86/170 (50.59%), Postives = 108/170 (63.53%), Query Frame = 3
Query:  147 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            AQ+C V   GAFTGE SA ML      + ++GHSERR +  ES++ V DK A     GL  + C+GETLEQ E+G T AVV  Q +A+  K  I++ +N V+ YEPVWAIGTGK ATP  AQE+ A +R WL +   A VA   +I+YGGSV  AN  EL  Q D+DG L
Sbjct:   63 AQDCDVNTSGAFTGENSAVMLKEFGCKYTLVGHSERRVIHGESSEVVADKFAVTPENGLVPVLCIGETLEQFEAGETKAVVEAQLQAVVTKSGITSLNNAVIGYEPVWAIGTGKTATPEIAQEIPAHIRSWLAEQ-DAAVANKVQILYGGSVKPANSAELFGQADIDGGL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_PELLD (Triosephosphate isomerase OS=Pelodictyon luteolum (strain DSM 273) GN=tpiA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.424e-38
Identity = 83/174 (47.70%), Postives = 112/174 (64.37%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            S   + AQNC     GA+TGEVS  ML  +   +VI+GHSERR    E+++ V  ++   L+ G+KVI CVGETL +RE G T  VV+ Q     + +++  ++V+AYEPVWAIGTGK A+  QAQEVH  +R  +K    AEV+ + RI YGGSV  +N +EL A PD+DG L
Sbjct:   58 SGIALVAQNCHYEDDGAYTGEVSTGMLKAVGCSYVIIGHSERRQYFGETDETVNLRIKKVLASGMKVILCVGETLAEREEGVTGTVVSRQVTEGLKGVADITDLVIAYEPVWAIGTGKTASSDQAQEVHRLIRDTVKGMYGAEVSEAVRIQYGGSVKASNAEELFAMPDIDGGL 231          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.424e-38
Identity = 85/181 (46.96%), Postives = 120/181 (66.30%), Query Frame = 3
Query:  114 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            +S +     + +QN   ++ GAFTGEVSA ML  +   +VI+GHSERRAL  E++  +  K A+A + GL  I CVGETLE+R+SG+T  +V  Q +A+ +   ++ + N ++AYEPVWAIGTGK A+P QAQ VHA LR++L  +   ++A S R++YGGSV   N   L AQ D+DG L
Sbjct:   49 RSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQFLAKD-DPDIAQSLRLLYGGSVKADNAALLFAQSDIDGGL 228          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTE (Triosephosphate isomerase OS=Chlorobium tepidum GN=tpiA PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.166e-38
Identity = 87/174 (50.00%), Postives = 106/174 (60.92%), Query Frame = 3
Query:  129 SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            S   + AQNC     G FTGEVS  ML      +VILGHSERR L  E+N  V  KV  AL++GL VI CVGETL++RE G T  +V  Q       +++   +V+AYEPVWAIGTGK AT  QAQEVHA +R  + +    + A   RI YGGSV  +N  EL A PD+DG L
Sbjct:   53 SGIRLCAQNCHYESDGPFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNATVNLKVKKALAEGLSVILCVGETLDERERGVTGQIVTAQVVEGLIDVTDISKLVIAYEPVWAIGTGKTATKEQAQEVHALIRAKVTELYGQKAADHLRIQYGGSVKPSNAAELFAMPDIDGGL 226          
BLAST of CF832878 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 158.303 bits (399), Expect = 3.166e-38
Identity = 84/172 (48.84%), Postives = 109/172 (63.37%), Query Frame = 3
Query:  141 VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFL 650
            + AQN +    GAFTGE+S  ML  + + +VI+GHSERR +  E ++F+  KV   L +G+  I CVGETLE+RE G T  VV +Q +     +   +   VV+AYEPVWAIGTG+VATP QAQEVHA +RK L +    E A S RI+YGGS+   N   L  Q D+DG L
Sbjct:  461 LGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGL 632          
The following BLAST results are available for this feature:
BLAST of CF832878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_OCEIH8.333e-3950.57Triosephosphate isomerase OS=Oceanobacillus iheyen... [more]
TPIS_CHLCH8.333e-3949.16Triosephosphate isomerase OS=Chlorobium chlorochro... [more]
TPIS_COLP31.088e-3847.75Triosephosphate isomerase OS=Colwellia psychreryth... [more]
TPIS_PSEU51.421e-3849.13Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_FUSNN1.856e-3846.96Triosephosphate isomerase OS=Fusobacterium nucleat... [more]
TPIS_VIBSA2.424e-3850.59Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]
TPIS_PELLD2.424e-3847.70Triosephosphate isomerase OS=Pelodictyon luteolum ... [more]
TPIS_ALCBS2.424e-3846.96Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_CHLTE3.166e-3850.00Triosephosphate isomerase OS=Chlorobium tepidum GN... [more]
PGKT_THEMA3.166e-3848.84Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832878 ID=CF832878; Name=CF832878; organism=Citrus sinensis; type=EST; length=650bp
GGACATCTGAGCGATTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAA
GTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTT
TCTTCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTC
AAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCT
GAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGA
AAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTG
CTTATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACT
CTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAAC
AAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGTGTTGGCTT
ATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCCCTGCTCAG
GCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGACAATGTCAG
TGCTGAAGTTGCAGCATCAACTAGAATCATCTACGGAGGTTCTGTAAATG
GAGCAAATTGCAAAGAATTGGCAGCACAACCTGATGTGGATGGATTTTTG
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