CF832883

Overview
NameCF832883
Unique NameCF832883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832883_ssr70 microsatellite CF832883_ssr70:70..79. BLAST: Citrus ESTs to Prunus persica proteins V1
CF832883_ssr626 microsatellite CF832883_ssr626:626..637. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10201 contig Csv1_Contig10201:261..1062. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML25_ORYSJ (Probable calcium-binding protein CML25/26 OS=Oryza sativa subsp. japonica GN=CML25 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12
Identity = 53/139 (38.13%), Postives = 68/139 (48.92%), Query Frame = -2
Query:  161 VFRHFDGDGDGKISALELRAYFGS-IGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXK---AFEMF-ELEKKGCITPKGLQRMLNRLGDSKS---YDECVAMIQVFDTDGNGVLDYHEFSQMM 553
            VF  FD DGDGK+SA ELR    + +GE +S EEA A +              +F R+                   AF+M+ E E+   ITP  L+RML RLG        +EC AMI  FD +G+GVL + EF  MM
Sbjct:    8 VFAAFDKDGDGKVSASELRGCMAAALGEEVSEEEAAAILATADTDGDGLLDHHEFMRLSAAHQLQEPAEESLRCLREAFDMYAEEEETAVITPASLRRMLRRLGSEHQRLEMEECRAMICRFDLNGDGVLSFDEFRVMM 146          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML2_ORYSJ (Putative calmodulin-like protein 2 OS=Oryza sativa subsp. japonica GN=CML2 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.279e-12
Identity = 40/135 (29.63%), Postives = 68/135 (50.37%), Query Frame = -2
Query:  161 ELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 565
            E ++ F  FD DGDG I++ EL    GS+G+  +  E +  +            F++F  +               +AF +F+ ++ G ITP  L+ ++  LGD  S DE   M+   D+DG+G ++Y+EF ++M
Sbjct:   11 EFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIREAFRVFDKDQNGFITPDELRHVMANLGDPLSDDELADMLHEADSDGDGQINYNEFLKVM 145          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.588e-12
Identity = 39/138 (28.26%), Postives = 68/138 (49.28%), Query Frame = -2
Query:  161 DELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXK--AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 568
            +++K+VF+ FD + DGKIS  EL+   G++    S EE +A +              +F  +                  AF++++L++ G I+   L  ++  LG+  S  +C  MI   D+DG+G +D+ EF +MM
Sbjct:   14 EDIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDEFVALFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCVDFEEFKKMM 151          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.626e-11
Identity = 41/139 (29.50%), Postives = 69/139 (49.64%), Query Frame = -2
Query:  158 EDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXK-AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMMA 571
            E+E+++VFR FD +GDG+IS  EL A F S+G   + +E    +              +F  +               + AF +F+ +  G I+   L R+L+ LG+  +  +C  MI+  D +G+G++ + EF  MMA
Sbjct:   38 EEEMERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLGEKATVQQCRRMIEGVDQNGDGLISFEEFKVMMA 176          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML3_ORYSJ (Calmodulin-like protein 3 OS=Oryza sativa subsp. japonica GN=CML3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.124e-11
Identity = 39/135 (28.89%), Postives = 66/135 (48.89%), Query Frame = -2
Query:  161 ELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTRMXXXXXXXXXXXXXXXKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 565
            E ++ F  FD DGDG I++ EL    GS+G+  +  E +  +            F++F  +                AF +F+ ++ G ITP  L+ ++  L D  S DE   M+   D+DG+G ++Y+EF ++M
Sbjct:   11 EFREAFNLFDKDGDGTITSKELGTVMGSLGQSPTEAELKKMVEEVDADGSGSIEFEEFLGLLARKLRDTGAEDDIRDAFRVFDKDQNGFITPDELRHVMANLSDPLSDDELADMLHEADSDGDGQINYNEFLKVM 145          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: ALL8_OLEEU (Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.774e-11
Identity = 41/143 (28.67%), Postives = 69/143 (48.25%), Query Frame = -2
Query:  161 IPKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFT---RMXXXXXXXXXXXXXXXKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 580
            + + +E++ VF  FD +GDGKIS  EL     ++G   S EE    +             Q+F    +                +AFE+++ +  G I+   L ++L RLG+  +  +CV MI+  D+DG+G + + EF +MM
Sbjct:   15 LQEPNEVQGVFNRFDANGDGKISGDELAGVLKALGSNTSKEEIGRIMEEIDTDKDGFINVQEFAAFVKAETDPYPSSGGENELKEAFELYDQDHNGLISSVELHKILTRLGERYAEHDCVEMIKSVDSDGDGYVSFEEFKKMM 157          
BLAST of CF832883 vs. ExPASy Swiss-Prot
Match: CML37_ARATH (Calcium-binding protein CML37 OS=Arabidopsis thaliana GN=CML37 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.179e-11
Identity = 44/137 (32.12%), Postives = 68/137 (49.64%), Query Frame = -2
Query:  161 DELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXFQDFTR-MXXXXXXXXXXXXXXXKAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDECVAMIQVFDTDGNGVLDYHEFSQMM 568
            +EL+ VF + D + DGKIS  EL++    +G  +S  E    +            F++F + M               +AF M+ +E +  IT   L+R L+RLG+S + D C  MI+ FD + +GVL + EF  MM
Sbjct:   48 NELRTVFDYMDANSDGKISGEELQSCVSLLGGALSSREVEEVVKTSDVDGDGFIDFEEFLKLMEGEDGSDEERRKELKEAFGMYVMEGEEFITAASLRRTLSRLGESCTVDACKVMIRGFDQNDDGVLSFDEFVLMM 184          
The following BLAST results are available for this feature:
BLAST of CF832883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CML25_ORYSJ1.471e-1238.13Probable calcium-binding protein CML25/26 OS=Oryza... [more]
CML2_ORYSJ4.279e-1229.63Putative calmodulin-like protein 2 OS=Oryza sativa... [more]
CML23_ARATH5.588e-1228.26Probable calcium-binding protein CML23 OS=Arabidop... [more]
CML10_ORYSJ1.626e-1129.50Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CML3_ORYSJ2.124e-1128.89Calmodulin-like protein 3 OS=Oryza sativa subsp. j... [more]
ALL8_OLEEU2.774e-1128.67Calcium-binding allergen Ole e 8 OS=Olea europaea ... [more]
CML37_ARATH6.179e-1132.12Calcium-binding protein CML37 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832883 ID=CF832883; Name=CF832883; organism=Citrus sinensis; type=EST; length=800bp
TTTTTTTTTTTTTTACTATAAATTTATTTATACAAATAAATTATCTTTTA
TATATTAGGAAAACTATTTAGAGAGAGAGATGGTTATAATAATAAATTTA
TTTACACAACAACTTAATTCGAAAGTGGGCACGTAGGTAGCAAATAAATA
GTAATTAAGCCATCATTTGGGAAAACTCATGATAATCAAGAACTCCGTTG
CCATCAGTATCAAAGACTTGAATCATGGCAACACACTCGTCATAAGATTT
AGAATCGCCAAGGCGATTCAACATCCTTTGCAAACCTTTTGGAGTTATGC
ACCCTTTCTTCTCCAATTCAAACATCTCAAAGGCCTTCTTCAGATCCTCG
TCATCGCCATCGCCTCGATCGTCTTTGAGCAGCATCCTCGTGAAATCTTG
AAAATCCAATAAACTGTCGCCATCGGTGTCAAAATCATCAATCGCTGCTC
GAGCCTCTTCGTATGACATGTACTCACCAATGGAACCAAAGTAAGCCCTA
AGTTCGAGAGCCGAAATTTTCCCATCTCCATCACCATCAAAATGACGAAA
AACTTGCTTCAACTCATCTTCTTTTGGGATCTTTTTGGGTTCGCATGCAG
ACAAGGAGGAGTTTGGAGAGCTTAATGTTGTTGTTGTTGACGATGAAGAG
CTAAACTTTGACTTTGATCGACGACGATGAAGGCTTAACCCATGACCCTT
GTTAGAAAAGAACCACTTAGAATTAGATGGCTTAGAACCTGCAACCTTGT
TATCATCGGTTGCCATATGTTTTCCTTGTTAATGGATATGTCAATATATA
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