CF832892

Overview
NameCF832892
Unique NameCF832892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1030 contig Csv1_Contig1030:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_XENLA (Histone H3.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 7.463e-59
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_PORAF (Histone H3.2 OS=Poroderma africanus PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 7.463e-59
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_ONCMY (Histone H3.2 OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 7.463e-59
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_MUSPA (Histone H3.2 OS=Mus pahari GN=H312 PE=2 SV=3)

HSP 1 Score: 227.254 bits (578), Expect = 7.463e-59
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_MOUSE (Histone H3.2 OS=Mus musculus GN=Hist1h3b PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 7.463e-59
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_ICTBU (Histone H3.2 OS=Ictiobus bubalus PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 7.463e-59
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_HUMAN (Histone H3.2 OS=Homo sapiens GN=HIST2H3A PE=1 SV=3)

HSP 1 Score: 227.254 bits (578), Expect = 7.463e-59
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_DANRE (Histone H3.2 OS=Danio rerio GN=zgc:113984 PE=2 SV=3)

HSP 1 Score: 227.254 bits (578), Expect = 7.463e-59
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_CHICK (Histone H3.2 OS=Gallus gallus GN=H3-I PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 7.463e-59
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_CAIMO (Histone H3.2 OS=Cairina moschata PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 7.463e-59
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
The following BLAST results are available for this feature:
BLAST of CF832892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_XENLA7.463e-5995.83Histone H3.2 OS=Xenopus laevis PE=1 SV=2[more]
H32_PORAF7.463e-5995.83Histone H3.2 OS=Poroderma africanus PE=1 SV=2[more]
H32_ONCMY7.463e-5995.83Histone H3.2 OS=Oncorhynchus mykiss PE=1 SV=2[more]
H32_MUSPA7.463e-5995.83Histone H3.2 OS=Mus pahari GN=H312 PE=2 SV=3[more]
H32_MOUSE7.463e-5995.83Histone H3.2 OS=Mus musculus GN=Hist1h3b PE=1 SV=2[more]
H32_ICTBU7.463e-5995.83Histone H3.2 OS=Ictiobus bubalus PE=1 SV=2[more]
H32_HUMAN7.463e-5995.83Histone H3.2 OS=Homo sapiens GN=HIST2H3A PE=1 SV=3[more]
H32_DANRE7.463e-5995.83Histone H3.2 OS=Danio rerio GN=zgc:113984 PE=2 SV=... [more]
H32_CHICK7.463e-5995.83Histone H3.2 OS=Gallus gallus GN=H3-I PE=1 SV=2[more]
H32_CAIMO7.463e-5995.83Histone H3.2 OS=Cairina moschata PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832892 ID=CF832892; Name=CF832892; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTAAATCTTCAATGTCACAAATCCTCAAATAAATCCTGAAACTC
TCAACAGTTAAACCCAAAAAAATAAAAATAAAAATAAAAACCAAAACCAA
AACAGTAACCTAGCCTATAGAATCATCCACTTCCAAGTCTTATAACCGTA
ACCAAGCCACATCTAGAATAAATTCAAAACTAGCATTTTTGAAATACTGC
AGCTCGCAACTTAAGAAACCAAGTTATCATTCAATGATAATGAGGCTAGT
TGATCAGCCGGATTACCAGCCTGCTGTTGCTGAGCAACATTCCTCAGAAC
CTCCATTGCCTCAGCCACTTTCGCTTTCAGAGCTTCTGGTGATTCGAGCA
AGTGCAAAACCTCAGCCTCGTGCCGATTGAGTGGAAGAGTTGAAGAAACT
CAGAGATGGCCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAG
GCTCCTAGGAAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCAC
CACCGGTGGTGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCC
TTCGAGAAATTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAA
CTCCCATTCCAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGA
TCTGCGTTTCCAGAGCCATGCAGTACTGGCCCTGCAGGAGGCAGCGGAGG
CTTACCTTGTTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCA
AAGCGTGTCACTATT
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