CF832892

Overview
NameCF832892
Unique NameCF832892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1030 contig Csv1_Contig1030:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_BOVIN (Histone H3.2 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 7.463e-59
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H3L3_ARATH (Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g75600 PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 9.746e-59
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKS GGKAPR  LATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD+KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_TOBAC (Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.746e-59
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_PETCR (Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 9.746e-59
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_ORYSJ (Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os01g0866200 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.746e-59
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_ORYSI (Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.746e-59
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_MAIZE (Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 9.746e-59
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_EUPES (Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 9.746e-59
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_BRANA (Histone H3.2 OS=Brassica napus PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 9.746e-59
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_ASPOF (Histone H3.2 OS=Asparagus officinalis PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 9.746e-59
Identity = 116/120 (96.67%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
The following BLAST results are available for this feature:
BLAST of CF832892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_BOVIN7.463e-5995.83Histone H3.2 OS=Bos taurus PE=1 SV=2[more]
H3L3_ARATH9.746e-5996.67Histone H3-like 3 OS=Arabidopsis thaliana GN=At1g7... [more]
H32_TOBAC9.746e-5996.67Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1[more]
H32_PETCR9.746e-5996.67Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 ... [more]
H32_ORYSJ9.746e-5996.67Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os... [more]
H32_ORYSI9.746e-5996.67Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H32_MAIZE9.746e-5996.67Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2[more]
H32_EUPES9.746e-5996.67Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3[more]
H32_BRANA9.746e-5996.67Histone H3.2 OS=Brassica napus PE=2 SV=3[more]
H32_ASPOF9.746e-5996.67Histone H3.2 OS=Asparagus officinalis PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832892 ID=CF832892; Name=CF832892; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTAAATCTTCAATGTCACAAATCCTCAAATAAATCCTGAAACTC
TCAACAGTTAAACCCAAAAAAATAAAAATAAAAATAAAAACCAAAACCAA
AACAGTAACCTAGCCTATAGAATCATCCACTTCCAAGTCTTATAACCGTA
ACCAAGCCACATCTAGAATAAATTCAAAACTAGCATTTTTGAAATACTGC
AGCTCGCAACTTAAGAAACCAAGTTATCATTCAATGATAATGAGGCTAGT
TGATCAGCCGGATTACCAGCCTGCTGTTGCTGAGCAACATTCCTCAGAAC
CTCCATTGCCTCAGCCACTTTCGCTTTCAGAGCTTCTGGTGATTCGAGCA
AGTGCAAAACCTCAGCCTCGTGCCGATTGAGTGGAAGAGTTGAAGAAACT
CAGAGATGGCCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAG
GCTCCTAGGAAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCAC
CACCGGTGGTGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCC
TTCGAGAAATTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAA
CTCCCATTCCAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGA
TCTGCGTTTCCAGAGCCATGCAGTACTGGCCCTGCAGGAGGCAGCGGAGG
CTTACCTTGTTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCA
AAGCGTGTCACTATT
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