CF832892

Overview
NameCF832892
Unique NameCF832892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1030 contig Csv1_Contig1030:1..765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H3_DERIM (Histone H3, embryonic OS=Dermasterias imbricata PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 2.171e-58
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H3_ACRFO (Histone H3 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 2.171e-58
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAA KSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AVLALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAAAKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H33_TRIPS (Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3 PE=2 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 2.171e-58
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_ENCAL (Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 2.171e-58
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H32_CRILO (Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 2.171e-58
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTV LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVTLREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 3.704e-58
Identity = 115/120 (95.83%), Postives = 117/120 (97.50%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQ+ARKS GGKAP KQLATKAARKSAPTTGGVKKPHR+RPGTVALREIRKYQKSTELL RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H33_XENTR (Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.837e-58
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 4.837e-58
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.837e-58
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
[Close]
BLAST of CF832892 vs. ExPASy Swiss-Prot
Match: H33_RAT (Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 4.837e-58
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:  406 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 765
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTI
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
The following BLAST results are available for this feature:
BLAST of CF832892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_DERIM2.171e-5895.00Histone H3, embryonic OS=Dermasterias imbricata PE... [more]
H3_ACRFO2.171e-5895.83Histone H3 OS=Acropora formosa PE=3 SV=2[more]
H33_TRIPS2.171e-5895.83Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3... [more]
H32_ENCAL2.171e-5895.83Histone H3.2 OS=Encephalartos altensteinii PE=1 SV... [more]
H32_CRILO2.171e-5895.00Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3[more]
H3L1_ARATH3.704e-5895.83Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H33_XENTR4.837e-5895.00Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1... [more]
H33_XENLA4.837e-5895.00Histone H3.3 OS=Xenopus laevis PE=1 SV=3[more]
H33_SPISO4.837e-5895.00Histone H3.3 OS=Spisula solidissima PE=1 SV=2[more]
H33_RAT4.837e-5895.00Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02J24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832892 ID=CF832892; Name=CF832892; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTAAATCTTCAATGTCACAAATCCTCAAATAAATCCTGAAACTC
TCAACAGTTAAACCCAAAAAAATAAAAATAAAAATAAAAACCAAAACCAA
AACAGTAACCTAGCCTATAGAATCATCCACTTCCAAGTCTTATAACCGTA
ACCAAGCCACATCTAGAATAAATTCAAAACTAGCATTTTTGAAATACTGC
AGCTCGCAACTTAAGAAACCAAGTTATCATTCAATGATAATGAGGCTAGT
TGATCAGCCGGATTACCAGCCTGCTGTTGCTGAGCAACATTCCTCAGAAC
CTCCATTGCCTCAGCCACTTTCGCTTTCAGAGCTTCTGGTGATTCGAGCA
AGTGCAAAACCTCAGCCTCGTGCCGATTGAGTGGAAGAGTTGAAGAAACT
CAGAGATGGCCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAG
GCTCCTAGGAAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCAC
CACCGGTGGTGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCC
TTCGAGAAATTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAA
CTCCCATTCCAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGA
TCTGCGTTTCCAGAGCCATGCAGTACTGGCCCTGCAGGAGGCAGCGGAGG
CTTACCTTGTTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCA
AAGCGTGTCACTATT
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